Wall clock time and date at job start Thu Apr 9 2020 14:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36789 * 120.67694 * 2 1 4 4 C 1.40808 * 119.40868 * 179.76245 * 3 2 1 5 5 C 1.40992 * 119.61063 * 180.25261 * 4 3 2 6 6 H 1.07997 * 119.99860 * 0.26863 * 5 4 3 7 7 C 1.40237 * 119.99785 * 180.27027 * 5 4 3 8 8 N 1.30625 * 120.00154 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99997 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47295 * 59.99637 * 9 7 5 11 11 H 1.48495 * 109.47455 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47116 * 299.99921 * 9 7 5 13 13 N 1.33828 * 120.77637 * 0.52455 * 4 3 2 14 14 C 1.31623 * 121.46215 * 359.75077 * 13 4 3 15 15 O 1.35447 * 119.74625 * 180.02562 * 14 13 4 16 16 C 1.40323 * 120.67613 * 180.28238 * 2 1 3 17 17 C 1.43198 * 120.40694 * 359.95313 * 16 2 1 18 18 N 3.49437 * 81.34495 * 180.25282 * 2 1 3 19 19 H 1.09002 * 109.47152 * 269.71896 * 1 2 3 20 20 H 1.09001 * 109.46980 * 149.71997 * 1 2 3 21 21 H 1.09004 * 109.47113 * 29.71978 * 1 2 3 22 22 H 1.07991 * 120.29378 * 0.02562 * 3 2 1 23 23 H 0.97001 * 119.99915 * 180.02562 * 8 7 5 24 24 H 0.96699 * 113.99892 * 269.98309 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2049 1.1765 0.0000 4 6 3.6126 1.1453 0.0051 5 6 4.3362 2.3554 0.0105 6 1 3.8106 3.2988 0.0151 7 6 5.7384 2.3338 0.0099 8 7 6.3741 1.1927 0.0048 9 14 6.6972 3.9370 0.0178 10 1 6.3508 4.7150 1.2344 11 1 8.1528 3.6433 0.0163 12 1 6.3500 4.7274 -1.1906 13 7 4.2718 -0.0194 -0.0006 14 6 3.6332 -1.1702 -0.0062 15 8 4.3353 -2.3285 -0.0114 16 6 2.2229 -1.2069 -0.0059 17 6 1.5305 -2.4603 -0.0111 18 7 0.9812 -3.4545 -0.0152 19 1 -0.3633 -0.0050 1.0277 20 1 -0.3633 -0.8875 -0.5182 21 1 -0.3633 0.8925 -0.5095 22 1 1.6809 2.1207 0.0004 23 1 7.3440 1.1778 0.0047 24 1 4.5393 -2.6608 -0.8963 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261021726.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:02 Heat of formation + Delta-G solvation = -12.148785 kcal Electronic energy + Delta-G solvation = -12318.705079 eV Core-core repulsion = 10003.278162 eV Total energy + Delta-G solvation = -2315.426917 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 204.064 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.74948 -37.92504 -37.30927 -35.69558 -33.83019 -31.49107 -28.79347 -27.77023 -23.97511 -22.74899 -19.52952 -19.19771 -18.95232 -17.28166 -16.78421 -16.07691 -15.08969 -14.77596 -14.46285 -13.94143 -13.86337 -13.65997 -13.40551 -13.22933 -12.95100 -12.80981 -12.62996 -12.40657 -12.14525 -11.85872 -11.15690 -9.96951 -9.72900 -9.53247 -8.45046 -6.71692 0.27069 0.99111 1.46278 1.52248 1.59655 1.95831 2.19930 2.27692 2.81432 3.13685 3.48890 3.74658 4.18158 4.40842 4.76067 4.80761 4.82392 5.03582 5.11536 5.21566 5.45493 5.67502 5.91033 6.06809 6.49017 6.62744 6.82467 7.02764 7.93891 8.24954 Molecular weight = 204.06amu Principal moments of inertia in cm(-1) A = 0.050502 B = 0.010162 C = 0.008505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.295978 B = 2754.776706 C = 3291.388590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.025 3.975 3 C -0.277 4.277 4 C 0.240 3.760 5 C -0.410 4.410 6 H 0.115 0.885 7 C 0.016 3.984 8 N -0.726 5.726 9 Si 0.995 3.005 10 H -0.254 1.254 11 H -0.272 1.272 12 H -0.252 1.252 13 N -0.536 5.536 14 C 0.377 3.623 15 O -0.502 6.502 16 C -0.284 4.284 17 C 0.311 3.689 18 N -0.518 5.518 19 H 0.081 0.919 20 H 0.054 0.946 21 H 0.093 0.907 22 H 0.137 0.863 23 H 0.288 0.712 24 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.479 5.622 -1.703 6.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.019 3.981 3 C -0.299 4.299 4 C 0.118 3.882 5 C -0.438 4.438 6 H 0.133 0.867 7 C -0.210 4.210 8 N -0.345 5.345 9 Si 0.814 3.186 10 H -0.178 1.178 11 H -0.197 1.197 12 H -0.175 1.175 13 N -0.260 5.260 14 C 0.183 3.817 15 O -0.311 6.311 16 C -0.297 4.297 17 C 0.001 3.999 18 N -0.199 5.199 19 H 0.099 0.901 20 H 0.073 0.927 21 H 0.111 0.889 22 H 0.155 0.845 23 H 0.099 0.901 24 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -1.248 4.057 -1.113 4.388 hybrid contribution 0.092 0.387 -0.410 0.571 sum -1.156 4.445 -1.522 4.838 Atomic orbital electron populations 1.20798 0.89274 1.03122 1.03059 1.19649 0.96427 0.90496 0.91572 1.21474 0.94150 0.97750 1.16485 1.18875 0.90042 0.90869 0.88412 1.20458 0.92256 0.93624 1.37489 0.86691 1.27286 0.99344 1.01730 0.92621 1.70166 1.10581 1.29224 1.24516 0.85049 0.76621 0.76350 0.80618 1.17840 1.19680 1.17546 1.68319 1.38563 0.96821 1.22288 1.19627 0.85174 0.86193 0.90661 1.84552 1.76241 1.35633 1.34665 1.16550 0.91637 0.87389 1.34084 1.25566 0.91531 0.92136 0.90663 1.81051 1.10889 1.11689 1.16226 0.90061 0.92719 0.88855 0.84546 0.90108 0.73418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.25 9.66 71.24 0.69 -2.56 14 2 C 0.02 1.00 5.91 -19.70 -0.12 0.88 14 3 C -0.28 -11.62 9.43 22.56 0.21 -11.41 14 4 C 0.24 11.74 6.55 40.14 0.26 12.00 14 5 C -0.41 -18.91 9.12 23.43 0.21 -18.70 14 6 H 0.12 4.65 7.85 -2.91 -0.02 4.62 14 7 C 0.02 0.72 5.50 85.36 0.47 1.19 14 8 N -0.73 -35.30 11.44 21.87 0.25 -35.05 14 9 Si 0.99 32.47 29.56 68.60 2.03 34.49 14 10 H -0.25 -8.00 7.11 99.48 0.71 -7.29 14 11 H -0.27 -8.71 7.11 99.48 0.71 -8.00 14 12 H -0.25 -7.80 7.11 99.48 0.71 -7.09 14 13 N -0.54 -27.88 7.85 -301.63 -2.37 -30.25 14 14 C 0.38 18.03 7.77 85.42 0.66 18.70 14 15 O -0.50 -21.91 13.00 -87.44 -1.14 -23.04 14 16 C -0.28 -12.54 5.80 -20.83 -0.12 -12.66 14 17 C 0.31 13.40 13.48 88.33 1.19 14.59 14 18 N -0.52 -22.75 18.54 19.00 0.35 -22.40 14 19 H 0.08 2.28 8.14 -2.39 -0.02 2.26 14 20 H 0.05 1.70 7.17 -2.39 -0.02 1.68 14 21 H 0.09 2.35 8.09 -2.38 -0.02 2.33 14 22 H 0.14 4.91 8.06 -2.92 -0.02 4.89 14 23 H 0.29 12.63 8.29 -92.71 -0.77 11.86 14 24 H 0.41 13.67 9.06 -74.06 -0.67 13.00 14 Total: -1.00 -59.12 231.58 3.17 -55.95 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.58 Total: 18.26 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 3.46 Total: 2.04 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -1.77 Total: -87.70 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -1.14 Total: -23.04 kcal Atomic # 14 Polarization: 32.47 SS G_CDS: 2.03 Total: 34.49 kcal Total: -59.12 3.17 -55.95 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261021726.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.805 kcal (2) G-P(sol) polarization free energy of solvation -59.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds