Wall clock time and date at job start Thu Apr 9 2020 14:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30570 * 1 3 3 Si 1.86796 * 119.99705 * 2 1 4 4 H 1.48500 * 109.47325 * 274.86182 * 3 2 1 5 5 H 1.48508 * 109.47345 * 34.86157 * 3 2 1 6 6 H 1.48504 * 109.46929 * 154.86301 * 3 2 1 7 7 C 1.40617 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00272 * 173.72736 * 7 2 1 9 9 C 1.38806 * 119.99921 * 353.73032 * 7 2 1 10 10 C 1.37984 * 126.24500 * 335.49429 * 9 7 2 11 11 C 1.45960 * 110.37942 * 180.02562 * 10 9 7 12 12 C 1.40699 * 131.46436 * 179.97438 * 11 10 9 13 13 C 1.37527 * 119.88301 * 180.02562 * 12 11 10 14 14 C 1.38852 * 120.37120 * 0.02562 * 13 12 11 15 15 F 1.35098 * 119.89433 * 179.97438 * 14 13 12 16 16 C 1.38892 * 120.21257 * 0.02562 * 14 13 12 17 17 C 1.37244 * 120.11988 * 359.97438 * 16 14 13 18 18 C 1.50928 * 132.71360 * 180.02562 * 17 16 14 19 19 H 0.96996 * 119.99822 * 359.97438 * 1 2 3 20 20 H 1.08001 * 124.81223 * 0.02562 * 10 9 7 21 21 H 1.08004 * 120.05640 * 0.02562 * 12 11 10 22 22 H 1.08001 * 119.81767 * 180.02562 * 13 12 11 23 23 H 1.08000 * 119.96779 * 179.97438 * 16 14 13 24 24 H 1.09005 * 110.21970 * 60.89043 * 18 17 16 25 25 H 1.08997 * 110.21450 * 299.05162 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3057 0.0000 0.0000 3 14 2.2396 1.6178 0.0000 4 1 2.3843 2.1058 -1.3950 5 1 1.4922 2.6209 0.8003 6 1 3.5848 1.4127 0.5947 7 6 2.0088 -1.2178 -0.0005 8 1 3.0839 -1.2205 -0.1027 9 6 1.3211 -2.4163 0.1302 10 6 0.0862 -2.5880 0.7214 11 6 -0.3114 -3.9915 0.6698 12 6 -1.4649 -4.6507 1.1330 13 6 -1.5960 -6.0082 0.9558 14 6 -0.5956 -6.7334 0.3223 15 9 -0.7342 -8.0666 0.1539 16 6 0.5476 -6.0927 -0.1378 17 6 0.6935 -4.7385 0.0313 18 6 1.7889 -3.7716 -0.3469 19 1 -0.4850 0.8400 0.0004 20 1 -0.5028 -1.7962 1.1602 21 1 -2.2459 -4.0916 1.6268 22 1 -2.4820 -6.5131 1.3114 23 1 1.3234 -6.6606 -0.6296 24 1 1.9270 -3.7630 -1.4282 25 1 2.7202 -4.0448 0.1491 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261132524.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:32 Heat of formation + Delta-G solvation = -23.322894 kcal Electronic energy + Delta-G solvation = -12112.489239 eV Core-core repulsion = 9776.657814 eV Total energy + Delta-G solvation = -2335.831424 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 204.065 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -47.94405 -38.72047 -35.18286 -33.02272 -30.25937 -28.57228 -25.99101 -24.97944 -21.37457 -20.14853 -19.11411 -16.57123 -16.00756 -15.65017 -14.82443 -14.70970 -14.39007 -13.35788 -13.28593 -12.78052 -12.39772 -11.89679 -11.71052 -11.51900 -11.13967 -10.88685 -10.51585 -10.17053 -9.93175 -9.73361 -9.54947 -8.46413 -7.99051 -7.01193 -6.89648 -4.45279 1.97505 2.24189 2.85786 2.93868 2.98156 3.65018 3.74698 4.61939 5.14569 5.23304 5.53510 5.67001 6.09153 6.19844 6.34819 6.41422 6.58010 6.64946 6.82231 6.91114 7.04036 7.21849 7.37328 7.61175 7.68918 8.06701 8.15291 8.47268 8.74886 8.83473 9.93561 Molecular weight = 204.06amu Principal moments of inertia in cm(-1) A = 0.083434 B = 0.007765 C = 0.007197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.512739 B = 3604.872680 C = 3889.759171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.066 3.934 3 Si 0.920 3.080 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.414 4.414 8 H 0.083 0.917 9 C 0.075 3.925 10 C -0.323 4.323 11 C 0.019 3.981 12 C -0.159 4.159 13 C -0.125 4.125 14 C -0.008 4.008 15 F -0.163 7.163 16 C -0.108 4.108 17 C -0.151 4.151 18 C -0.054 4.054 19 H 0.285 0.715 20 H 0.123 0.877 21 H 0.112 0.888 22 H 0.113 0.887 23 H 0.112 0.888 24 H 0.081 0.919 25 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.202 -1.812 0.062 2.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.156 4.156 3 Si 0.743 3.257 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.441 4.441 8 H 0.101 0.899 9 C 0.072 3.928 10 C -0.344 4.344 11 C 0.018 3.982 12 C -0.178 4.178 13 C -0.144 4.144 14 C -0.028 4.028 15 F -0.142 7.142 16 C -0.127 4.127 17 C -0.152 4.152 18 C -0.090 4.090 19 H 0.097 0.903 20 H 0.141 0.859 21 H 0.130 0.870 22 H 0.131 0.869 23 H 0.130 0.870 24 H 0.099 0.901 25 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.001 -1.695 0.040 1.968 hybrid contribution 0.113 0.427 -0.093 0.452 sum 1.114 -1.267 -0.053 1.688 Atomic orbital electron populations 1.69727 1.07882 1.29771 1.30791 1.26171 0.94946 1.01749 0.92760 0.86099 0.80491 0.79784 0.79301 1.19253 1.19786 1.18168 1.19016 0.95270 0.89891 1.39932 0.89904 1.19417 0.93581 0.90759 0.89055 1.21761 1.02797 0.91062 1.18783 1.20146 0.91452 0.95342 0.91268 1.20509 0.98583 0.92850 1.05822 1.20595 0.97944 0.94628 1.01250 1.17233 0.98371 0.76834 1.10315 1.91341 1.96370 1.31700 1.94818 1.19897 0.96645 0.93885 1.02249 1.20264 0.98632 0.92320 1.03956 1.19857 0.95935 0.93112 1.00135 0.90326 0.85871 0.86964 0.86860 0.87004 0.90139 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.67 10.98 55.59 0.61 -18.06 15 2 C 0.07 1.54 5.44 -17.19 -0.09 1.45 15 3 Si 0.92 17.18 29.57 -169.99 -5.03 12.15 15 4 H -0.27 -4.92 7.11 56.52 0.40 -4.52 15 5 H -0.27 -5.03 7.11 56.52 0.40 -4.63 15 6 H -0.26 -4.74 7.11 56.52 0.40 -4.34 15 7 C -0.41 -10.09 9.34 -38.47 -0.36 -10.45 15 8 H 0.08 1.86 7.86 -52.49 -0.41 1.45 15 9 C 0.07 1.88 5.90 -104.30 -0.62 1.26 15 10 C -0.32 -8.40 9.64 -36.58 -0.35 -8.75 15 11 C 0.02 0.45 6.20 -105.01 -0.65 -0.20 15 12 C -0.16 -3.46 10.13 -38.91 -0.39 -3.85 15 13 C -0.13 -2.53 9.99 -39.61 -0.40 -2.93 15 14 C -0.01 -0.18 7.32 -39.11 -0.29 -0.46 15 15 F -0.16 -3.25 17.27 2.25 0.04 -3.21 15 16 C -0.11 -2.26 10.00 -39.70 -0.40 -2.65 15 17 C -0.15 -3.44 6.35 -104.00 -0.66 -4.10 15 18 C -0.05 -1.19 6.69 -28.72 -0.19 -1.38 15 19 H 0.29 6.31 8.29 -40.82 -0.34 5.97 15 20 H 0.12 3.37 6.57 -52.49 -0.34 3.03 15 21 H 0.11 2.23 8.06 -52.48 -0.42 1.81 15 22 H 0.11 1.96 8.06 -52.49 -0.42 1.54 15 23 H 0.11 2.05 8.06 -52.49 -0.42 1.63 15 24 H 0.08 1.66 8.14 -51.93 -0.42 1.24 15 25 H 0.08 1.50 8.14 -51.93 -0.42 1.08 15 LS Contribution 229.31 15.07 3.46 3.46 Total: -1.00 -26.16 229.31 -7.33 -33.48 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -2.01 Total: 4.26 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: -4.40 Total: -32.07 kcal Atomic # 7 Polarization: -18.67 SS G_CDS: 0.61 Total: -18.06 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.04 Total: -3.21 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -26.16 -7.33 -33.48 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261132524.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.161 kcal (2) G-P(sol) polarization free energy of solvation -26.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds