Wall clock time and date at job start Thu Apr 9 2020 14:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.35163 * 119.75847 * 85.00164 * 10 9 7 12 12 C 1.40345 * 120.24779 * 179.97438 * 11 10 9 13 13 C 1.36152 * 119.69354 * 359.97438 * 12 11 10 14 14 C 1.40647 * 119.20140 * 359.97438 * 13 12 11 15 15 N 1.32580 * 133.63770 * 179.97438 * 14 13 12 16 16 N 1.28550 * 110.19166 * 180.02562 * 15 14 13 17 17 N 1.28990 * 110.82575 * 0.02562 * 16 15 14 18 18 N 1.35888 * 119.75706 * 264.72372 * 10 9 7 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.08001 * 119.87561 * 359.97438 * 11 10 9 23 23 H 1.07999 * 120.15616 * 180.02562 * 12 11 10 24 24 H 1.07993 * 120.40282 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.7439 -4.0882 1.1695 12 6 3.6562 -5.1546 1.1814 13 6 4.0222 -5.7422 0.0091 14 6 3.4758 -5.2670 -1.1966 15 7 3.6246 -5.6131 -2.4678 16 7 2.8980 -4.8650 -3.2193 17 7 2.2445 -4.0042 -2.5151 18 7 2.5860 -4.2278 -1.1742 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 2.4511 -3.6201 2.0977 23 1 4.0654 -5.5080 2.1163 24 1 4.7237 -6.5633 0.0050 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261150298.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:40 Heat of formation + Delta-G solvation = 133.630613 kcal Electronic energy + Delta-G solvation = -12453.238792 eV Core-core repulsion = 10176.426095 eV Total energy + Delta-G solvation = -2276.812697 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 204.071 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -42.83749 -38.44277 -34.24616 -33.03098 -31.64561 -30.65660 -27.73882 -24.43103 -23.97829 -23.20997 -20.74080 -18.30982 -16.81419 -16.61681 -16.08881 -15.73063 -14.81248 -13.57022 -13.24215 -12.93703 -12.45413 -12.16551 -12.05432 -11.75263 -11.48117 -11.12244 -10.91316 -10.79107 -10.49448 -10.03763 -9.81125 -9.56097 -8.65617 -7.94831 -6.28125 -4.35391 0.90717 0.99892 2.29715 2.66885 3.19654 3.26524 3.28416 3.52245 4.13946 4.26691 4.61169 5.01281 5.07489 5.09829 5.32639 5.63301 5.83220 6.08739 6.13970 6.28836 6.47196 6.80414 7.10951 7.33232 7.62475 7.90108 8.65771 8.86917 9.30346 10.81664 Molecular weight = 204.07amu Principal moments of inertia in cm(-1) A = 0.041193 B = 0.010159 C = 0.009177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.562616 B = 2755.424790 C = 3050.233387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.046 3.954 10 C 0.198 3.802 11 C -0.171 4.171 12 C -0.038 4.038 13 C -0.138 4.138 14 C 0.237 3.763 15 N -0.350 5.350 16 N -0.029 5.029 17 N -0.096 5.096 18 N -0.291 5.291 19 H 0.267 0.733 20 H 0.058 0.942 21 H 0.049 0.951 22 H 0.164 0.836 23 H 0.150 0.850 24 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.409 -7.805 5.408 10.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.137 4.137 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.077 0.923 9 C 0.009 3.991 10 C 0.089 3.911 11 C -0.195 4.195 12 C -0.063 4.063 13 C -0.161 4.161 14 C -0.016 4.016 15 N -0.210 5.210 16 N -0.022 5.022 17 N -0.079 5.079 18 N -0.070 5.070 19 H 0.077 0.923 20 H 0.076 0.924 21 H 0.067 0.933 22 H 0.182 0.818 23 H 0.167 0.833 24 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.955 -7.586 3.740 9.803 hybrid contribution 0.497 1.033 0.879 1.445 sum 5.452 -6.553 4.619 9.696 Atomic orbital electron populations 1.69928 1.06071 1.27517 1.48728 1.24950 0.94963 0.99438 0.94319 0.86413 0.79686 0.82449 0.78493 1.20326 1.20816 1.19662 1.20802 0.92892 0.88966 1.53561 0.92306 1.18691 0.91882 0.87722 1.00800 1.21635 0.95708 0.93382 0.80376 1.20936 1.01107 0.99669 0.97745 1.21376 0.93618 0.93112 0.98232 1.20115 1.04541 1.04194 0.87272 1.22950 0.92816 0.89702 0.96142 1.75033 1.23725 1.24912 0.97369 1.77794 1.01504 0.99041 1.23883 1.82875 1.23018 1.20619 0.81396 1.48884 1.27927 1.22058 1.08169 0.92312 0.92445 0.93280 0.81816 0.83261 0.82668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.70 13.29 55.43 0.74 -23.96 14 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 14 3 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 14 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 14 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 14 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 14 7 C -0.52 -13.73 9.09 -34.44 -0.31 -14.04 14 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 14 9 C 0.05 1.10 5.17 -29.03 -0.15 0.95 14 10 C 0.20 3.95 6.00 -81.89 -0.49 3.46 14 11 C -0.17 -2.60 9.62 -39.88 -0.38 -2.99 14 12 C -0.04 -0.45 10.07 -39.54 -0.40 -0.84 14 13 C -0.14 -1.87 10.11 -39.42 -0.40 -2.27 14 14 C 0.24 4.44 8.03 -156.37 -1.26 3.18 14 15 N -0.35 -7.16 12.27 31.05 0.38 -6.78 14 16 N -0.03 -0.65 13.35 60.35 0.81 0.16 14 17 N -0.10 -2.22 13.77 60.35 0.83 -1.39 14 18 N -0.29 -6.16 3.93 -8.64 -0.03 -6.19 14 19 H 0.27 7.05 8.31 -40.82 -0.34 6.71 14 20 H 0.06 1.34 8.11 -51.93 -0.42 0.91 14 21 H 0.05 1.30 8.02 -51.93 -0.42 0.88 14 22 H 0.16 2.15 8.06 -52.49 -0.42 1.72 14 23 H 0.15 1.09 8.06 -52.49 -0.42 0.67 14 24 H 0.16 1.57 8.06 -52.49 -0.42 1.15 14 LS Contribution 227.36 15.07 3.43 3.43 Total: -1.00 -30.41 227.36 -4.01 -34.42 By element: Atomic # 1 Polarization: -2.83 SS G_CDS: -1.65 Total: -4.47 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -3.49 Total: -10.85 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 2.72 Total: -38.16 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -30.41 -4.01 -34.42 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261150298.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.053 kcal (2) G-P(sol) polarization free energy of solvation -30.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds