Wall clock time and date at job start Thu Apr 9 2020 14:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.35163 * 119.75847 * 85.00164 * 10 9 7 12 12 C 1.40345 * 120.24779 * 179.97438 * 11 10 9 13 13 C 1.36152 * 119.69354 * 359.97438 * 12 11 10 14 14 C 1.40647 * 119.20140 * 359.97438 * 13 12 11 15 15 N 1.32580 * 133.63770 * 179.97438 * 14 13 12 16 16 N 1.28550 * 110.19166 * 180.02562 * 15 14 13 17 17 N 1.28990 * 110.82575 * 0.02562 * 16 15 14 18 18 N 1.35888 * 119.75706 * 264.72372 * 10 9 7 19 19 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 21 21 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 22 22 H 1.08001 * 119.87561 * 359.97438 * 11 10 9 23 23 H 1.07999 * 120.15616 * 180.02562 * 12 11 10 24 24 H 1.07993 * 120.40282 * 179.97438 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.7439 -4.0882 1.1695 12 6 3.6562 -5.1546 1.1814 13 6 4.0222 -5.7422 0.0091 14 6 3.4758 -5.2670 -1.1966 15 7 3.6246 -5.6131 -2.4678 16 7 2.8980 -4.8650 -3.2193 17 7 2.2445 -4.0042 -2.5151 18 7 2.5860 -4.2278 -1.1742 19 1 -0.4850 0.8401 0.0004 20 1 0.6239 -2.5567 0.8903 21 1 0.6246 -2.5571 -0.8897 22 1 2.4511 -3.6201 2.0977 23 1 4.0654 -5.5080 2.1163 24 1 4.7237 -6.5633 0.0050 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261150298.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:38 Heat of formation + Delta-G solvation = 112.927263 kcal Electronic energy + Delta-G solvation = -12454.136557 eV Core-core repulsion = 10176.426095 eV Total energy + Delta-G solvation = -2277.710461 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 204.071 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -44.31501 -39.83995 -35.84811 -34.73182 -33.16453 -32.22620 -29.41914 -25.99433 -25.57328 -24.70265 -22.32648 -19.67522 -18.74604 -18.01215 -17.71602 -16.90668 -16.59537 -15.08455 -14.71313 -14.68616 -13.87975 -13.70043 -13.57664 -13.43683 -13.11973 -12.73694 -12.53225 -12.45163 -12.06328 -11.81670 -11.65119 -11.00032 -10.70085 -9.37674 -8.30428 -6.44560 -0.43723 -0.30204 0.87899 1.13166 1.37353 1.40037 1.49375 2.24613 2.37722 2.80587 3.03699 3.28093 3.77766 3.91720 4.06114 4.33294 4.50303 4.76211 4.98184 5.01805 5.08001 5.14622 5.48271 5.58415 5.71728 5.93623 6.63611 7.24589 7.32799 8.79227 Molecular weight = 204.07amu Principal moments of inertia in cm(-1) A = 0.041193 B = 0.010159 C = 0.009177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.562616 B = 2755.424790 C = 3050.233387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.015 3.985 3 Si 0.964 3.036 4 H -0.284 1.284 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.534 4.534 8 H 0.055 0.945 9 C 0.057 3.943 10 C 0.142 3.858 11 C -0.133 4.133 12 C -0.011 4.011 13 C -0.118 4.118 14 C 0.217 3.783 15 N -0.361 5.361 16 N -0.044 5.044 17 N -0.153 5.153 18 N -0.297 5.297 19 H 0.269 0.731 20 H 0.054 0.946 21 H 0.004 0.996 22 H 0.190 0.810 23 H 0.218 0.782 24 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.739 -8.965 8.223 14.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.185 4.185 3 Si 0.788 3.212 4 H -0.211 1.211 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.572 4.572 8 H 0.074 0.926 9 C 0.019 3.981 10 C 0.033 3.967 11 C -0.156 4.156 12 C -0.036 4.036 13 C -0.141 4.141 14 C -0.033 4.033 15 N -0.224 5.224 16 N -0.037 5.037 17 N -0.137 5.137 18 N -0.076 5.076 19 H 0.078 0.922 20 H 0.072 0.928 21 H 0.023 0.977 22 H 0.207 0.793 23 H 0.235 0.765 24 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 7.288 -8.750 6.566 13.145 hybrid contribution -0.157 1.257 0.154 1.276 sum 7.131 -7.493 6.720 12.336 Atomic orbital electron populations 1.70037 1.07538 1.28348 1.50025 1.25801 0.95722 1.02897 0.94070 0.85460 0.79038 0.78578 0.78092 1.21066 1.19877 1.18243 1.21131 0.92890 0.90484 1.52677 0.92631 1.18288 0.92265 0.89075 0.98440 1.21398 0.98568 0.95032 0.81716 1.21516 0.98761 0.98822 0.96497 1.22052 0.91013 0.90383 1.00180 1.20934 1.03467 1.04289 0.85424 1.23782 0.92936 0.89454 0.97133 1.74895 1.23927 1.25128 0.98410 1.77712 1.01994 0.99422 1.24533 1.82793 1.25318 1.22499 0.83099 1.48795 1.28420 1.22770 1.07578 0.92227 0.92760 0.97747 0.79268 0.76535 0.78138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.85 13.29 21.45 0.28 -52.56 14 2 C 0.02 0.82 5.46 84.66 0.46 1.28 14 3 Si 0.96 42.57 29.54 68.60 2.03 44.60 14 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 14 5 H -0.27 -11.60 7.11 99.48 0.71 -10.89 14 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 14 7 C -0.53 -28.47 9.09 25.60 0.23 -28.24 14 8 H 0.06 2.92 7.74 -2.91 -0.02 2.90 14 9 C 0.06 2.79 5.17 29.10 0.15 2.94 14 10 C 0.14 5.60 6.00 41.22 0.25 5.85 14 11 C -0.13 -3.50 9.62 22.07 0.21 -3.29 14 12 C -0.01 -0.18 10.07 22.30 0.22 0.04 14 13 C -0.12 -2.57 10.11 22.37 0.23 -2.34 14 14 C 0.22 7.78 8.03 134.11 1.08 8.86 14 15 N -0.36 -14.72 12.27 -55.68 -0.68 -15.40 14 16 N -0.04 -2.01 13.35 37.02 0.49 -1.51 14 17 N -0.15 -7.51 13.77 37.02 0.51 -7.00 14 18 N -0.30 -12.67 3.93 -181.25 -0.71 -13.39 14 19 H 0.27 14.52 8.31 -92.71 -0.77 13.75 14 20 H 0.05 2.61 8.11 -2.39 -0.02 2.59 14 21 H 0.00 0.24 8.02 -2.39 -0.02 0.22 14 22 H 0.19 4.02 8.06 -2.91 -0.02 3.99 14 23 H 0.22 0.97 8.06 -2.91 -0.02 0.94 14 24 H 0.20 2.61 8.06 -2.91 -0.02 2.58 14 Total: -1.00 -72.18 227.36 5.97 -66.21 By element: Atomic # 1 Polarization: -7.27 SS G_CDS: 1.22 Total: -6.05 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 2.83 Total: -14.90 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -0.11 Total: -89.87 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -72.18 5.97 -66.21 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261150298.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.139 kcal (2) G-P(sol) polarization free energy of solvation -72.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds