Wall clock time and date at job start Thu Apr 9 2020 14:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00212 * 2 1 4 4 H 1.48505 * 109.47145 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46857 * 299.99925 * 3 2 1 6 6 H 1.48498 * 109.47086 * 60.00138 * 3 2 1 7 7 C 1.37881 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00143 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99485 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.46741 * 179.97438 * 9 7 2 11 11 C 1.40352 * 120.15808 * 269.97731 * 10 9 7 12 12 C 1.35167 * 120.25223 * 180.02562 * 11 10 9 13 13 N 1.35895 * 120.48465 * 0.04117 * 12 11 10 14 14 N 1.40163 * 134.01527 * 180.02562 * 13 12 11 15 15 N 1.28992 * 107.00485 * 179.97438 * 14 13 12 16 16 N 1.28560 * 110.82209 * 359.76979 * 15 14 13 17 17 C 1.32579 * 110.19003 * 0.38603 * 16 15 14 18 18 C 1.36145 * 120.15651 * 89.99970 * 10 9 7 19 19 H 0.96997 * 119.99895 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.47285 * 60.00091 * 9 7 2 21 21 H 1.08988 * 109.47017 * 299.99460 * 9 7 2 22 22 H 1.07996 * 119.87842 * 0.02726 * 11 10 9 23 23 H 1.07994 * 119.76163 * 180.02562 * 12 11 10 24 24 H 1.08000 * 120.39529 * 0.02562 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 6 2.6880 -4.1809 -1.2130 12 6 3.5659 -5.2086 -1.2152 13 7 4.0145 -5.7347 -0.0453 14 7 4.9002 -6.7711 0.2804 15 7 4.9520 -6.8324 1.5678 16 7 4.1948 -5.9393 2.0987 17 6 3.5867 -5.2349 1.1544 18 6 2.6746 -4.1645 1.1777 19 1 -0.4850 0.8400 0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6240 -2.5567 0.8902 22 1 2.3376 -3.7709 -2.1486 23 1 3.9133 -5.6149 -2.1536 24 1 2.3293 -3.7612 2.1182 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261153755.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:50 Heat of formation + Delta-G solvation = 132.485844 kcal Electronic energy + Delta-G solvation = -12211.482778 eV Core-core repulsion = 9934.620441 eV Total energy + Delta-G solvation = -2276.862338 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 204.071 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.95745 -38.56023 -34.52673 -32.94176 -31.81223 -30.35476 -28.03631 -24.49233 -24.20146 -22.48435 -21.49047 -18.13877 -16.89202 -16.67189 -16.36218 -15.37412 -14.74179 -14.51663 -13.17813 -12.94150 -12.48929 -12.25659 -12.19958 -11.74997 -11.39790 -11.08622 -10.86666 -10.78302 -10.64034 -10.06089 -9.89633 -9.25038 -8.66790 -8.13905 -6.29542 -4.35939 0.77642 0.95930 2.09665 2.49224 3.16434 3.25465 3.28755 3.54344 4.06815 4.25655 4.47206 4.79158 5.06962 5.19184 5.34685 5.60034 5.71005 5.94191 6.19365 6.41940 6.55338 6.75697 7.17577 7.30517 7.64503 7.94892 8.68501 8.71423 9.30499 10.80224 Molecular weight = 204.07amu Principal moments of inertia in cm(-1) A = 0.058990 B = 0.007791 C = 0.007618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.540476 B = 3593.015449 C = 3674.726082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.524 4.524 8 H 0.061 0.939 9 C 0.046 3.954 10 C 0.028 3.972 11 C -0.114 4.114 12 C 0.085 3.915 13 N -0.306 5.306 14 N -0.141 5.141 15 N -0.021 5.021 16 N -0.343 5.343 17 C 0.251 3.749 18 C -0.119 4.119 19 H 0.266 0.734 20 H 0.043 0.957 21 H 0.043 0.957 22 H 0.167 0.833 23 H 0.174 0.826 24 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.750 -5.525 -3.514 7.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.562 4.562 8 H 0.079 0.921 9 C 0.009 3.991 10 C 0.019 3.981 11 C -0.137 4.137 12 C -0.042 4.042 13 N -0.085 5.085 14 N -0.125 5.125 15 N -0.014 5.014 16 N -0.205 5.205 17 C 0.000 4.000 18 C -0.143 4.143 19 H 0.075 0.925 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.185 0.815 23 H 0.192 0.808 24 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.623 -6.612 -2.931 8.090 hybrid contribution -0.046 1.556 -0.593 1.666 sum 3.577 -5.056 -3.525 7.126 Atomic orbital electron populations 1.69936 1.06071 1.27309 1.49218 1.24984 0.94928 0.99455 0.94552 0.86416 0.80076 0.83011 0.77881 1.19590 1.20744 1.20685 1.20963 0.93130 0.89228 1.52840 0.92111 1.18533 0.92124 0.88541 0.99918 1.21006 0.93319 0.93304 0.90446 1.21349 0.96634 0.94592 1.01161 1.21612 0.97987 0.96648 0.87960 1.48722 1.28672 1.23060 1.08005 1.82595 1.13548 1.07284 1.09037 1.77726 1.10985 1.12355 1.00314 1.75124 1.13165 1.07794 1.24438 1.23009 0.97584 0.97360 0.82044 1.20312 0.98002 0.94410 1.01536 0.92467 0.93926 0.93891 0.81525 0.80832 0.82017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.68 13.29 55.43 0.74 -22.95 14 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 14 3 Si 0.90 19.76 29.54 -169.99 -5.02 14.73 14 4 H -0.27 -5.93 7.11 56.52 0.40 -5.52 14 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 14 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 14 7 C -0.52 -12.77 9.09 -34.44 -0.31 -13.09 14 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 14 9 C 0.05 0.97 5.11 -29.03 -0.15 0.82 14 10 C 0.03 0.48 5.07 -104.58 -0.53 -0.05 14 11 C -0.11 -1.61 9.68 -39.88 -0.39 -2.00 14 12 C 0.09 1.14 11.21 -16.84 -0.19 0.95 14 13 N -0.31 -5.22 3.94 -12.37 -0.05 -5.27 14 14 N -0.14 -2.59 13.99 60.35 0.84 -1.74 14 15 N -0.02 -0.40 13.36 60.35 0.81 0.40 14 16 N -0.34 -6.79 12.27 31.05 0.38 -6.40 14 17 C 0.25 4.63 8.03 -156.37 -1.26 3.38 14 18 C -0.12 -2.09 9.75 -39.43 -0.38 -2.47 14 19 H 0.27 6.72 8.31 -40.82 -0.34 6.38 14 20 H 0.04 0.92 8.09 -51.93 -0.42 0.50 14 21 H 0.04 0.97 8.08 -51.94 -0.42 0.55 14 22 H 0.17 1.93 8.06 -52.49 -0.42 1.51 14 23 H 0.17 1.63 8.06 -52.49 -0.42 1.20 14 24 H 0.16 2.71 8.06 -52.49 -0.42 2.28 14 LS Contribution 227.50 15.07 3.43 3.43 Total: -1.00 -28.44 227.50 -3.83 -32.27 By element: Atomic # 1 Polarization: -1.89 SS G_CDS: -1.65 Total: -3.54 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -3.30 Total: -10.93 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 2.72 Total: -35.96 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -28.44 -3.83 -32.27 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261153755.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.753 kcal (2) G-P(sol) polarization free energy of solvation -28.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds