Wall clock time and date at job start Thu Apr 9 2020 14:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31214 * 1 3 3 Si 1.86803 * 119.99877 * 2 1 4 4 H 1.48498 * 109.46958 * 240.27851 * 3 2 1 5 5 H 1.48507 * 109.46699 * 0.27622 * 3 2 1 6 6 H 1.48500 * 109.47093 * 120.27387 * 3 2 1 7 7 C 1.39085 * 120.00367 * 180.27877 * 2 1 3 8 8 H 1.07999 * 120.00119 * 179.72587 * 7 2 1 9 9 N 1.37054 * 119.99572 * 359.72046 * 7 2 1 10 10 C 1.35096 * 125.09613 * 180.02562 * 9 7 2 11 11 C 1.38100 * 107.85351 * 179.97438 * 10 9 7 12 12 C 1.41260 * 134.63094 * 180.02562 * 11 10 9 13 13 C 1.35614 * 119.59175 * 179.97438 * 12 11 10 14 14 C 1.40121 * 121.63192 * 359.97438 * 13 12 11 15 15 O 1.35837 * 119.15328 * 180.02562 * 14 13 12 16 16 C 1.36383 * 121.68705 * 0.03103 * 14 13 12 17 17 C 1.40760 * 119.60191 * 359.97438 * 16 14 13 18 18 N 1.32417 * 134.48460 * 180.38380 * 17 16 14 19 19 H 0.96990 * 119.99893 * 359.72595 * 1 2 3 20 20 H 1.07991 * 126.07427 * 359.96478 * 10 9 7 21 21 H 1.07997 * 120.20683 * 359.97438 * 12 11 10 22 22 H 1.07996 * 119.18402 * 179.97438 * 13 12 11 23 23 H 0.96701 * 113.99853 * 270.01845 * 15 14 13 24 24 H 1.07996 * 120.20250 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3121 0.0000 0.0000 3 14 2.2461 1.6178 0.0000 4 1 3.0947 1.6994 -1.2159 5 1 1.2810 2.7465 0.0068 6 1 3.1049 1.6936 1.2091 7 6 2.0076 -1.2045 -0.0059 8 1 3.0876 -1.2044 -0.0103 9 7 1.3224 -2.3914 -0.0058 10 6 1.8912 -3.6167 -0.0107 11 6 0.8773 -4.5543 -0.0083 12 6 0.8311 -5.9661 -0.0105 13 6 -0.3694 -6.5969 -0.0063 14 6 -1.5749 -5.8826 0.0007 15 8 -2.7489 -6.5658 0.0052 16 6 -1.5996 -4.5190 0.0031 17 6 -0.3885 -3.8016 -0.0011 18 7 -0.0716 -2.5159 0.0059 19 1 -0.4849 0.8400 0.0040 20 1 2.9507 -3.8259 -0.0158 21 1 1.7461 -6.5397 -0.0155 22 1 -0.3971 -7.6765 -0.0084 23 1 -3.0929 -6.7624 -0.8769 24 1 -2.5426 -3.9927 0.0081 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261195305.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:59 Heat of formation + Delta-G solvation = 24.185284 kcal Electronic energy + Delta-G solvation = -12334.481788 eV Core-core repulsion = 10020.630434 eV Total energy + Delta-G solvation = -2313.851353 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 204.064 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.59967 -39.39337 -36.64861 -35.01229 -32.76037 -31.10113 -29.20632 -27.34056 -24.06484 -22.56176 -21.30492 -20.14337 -18.67884 -17.72209 -17.07242 -16.33363 -16.11668 -15.50562 -15.28814 -14.78756 -14.26398 -13.74583 -13.26546 -13.08396 -12.84884 -12.53801 -12.28247 -12.14851 -11.55504 -11.12870 -10.82613 -10.47987 -9.48401 -8.72873 -8.22796 -6.54717 0.13774 1.06012 1.35821 1.43116 1.55151 1.95562 2.03440 2.61662 2.92675 3.12450 3.56556 3.84897 4.28611 4.45516 4.74245 4.82196 4.91386 4.96988 4.99538 5.41693 5.70350 5.80055 5.82179 6.02818 6.13546 6.52067 7.06550 7.16442 7.48624 8.21894 Molecular weight = 204.06amu Principal moments of inertia in cm(-1) A = 0.072395 B = 0.008712 C = 0.007803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.675675 B = 3213.245771 C = 3587.548578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C -0.004 4.004 3 Si 1.030 2.970 4 H -0.247 1.247 5 H -0.273 1.273 6 H -0.248 1.248 7 C -0.333 4.333 8 H 0.157 0.843 9 N -0.104 5.104 10 C -0.105 4.105 11 C -0.220 4.220 12 C -0.041 4.041 13 C -0.207 4.207 14 C 0.115 3.885 15 O -0.508 6.508 16 C -0.171 4.171 17 C 0.020 3.980 18 N -0.353 5.353 19 H 0.288 0.712 20 H 0.193 0.807 21 H 0.147 0.853 22 H 0.145 0.855 23 H 0.402 0.598 24 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.705 -3.854 -1.751 5.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.221 4.221 3 Si 0.846 3.154 4 H -0.171 1.171 5 H -0.197 1.197 6 H -0.172 1.172 7 C -0.468 4.468 8 H 0.174 0.826 9 N 0.139 4.861 10 C -0.259 4.259 11 C -0.230 4.230 12 C -0.062 4.062 13 C -0.228 4.228 14 C 0.068 3.932 15 O -0.320 6.320 16 C -0.194 4.194 17 C -0.122 4.122 18 N -0.189 5.189 19 H 0.098 0.902 20 H 0.210 0.790 21 H 0.164 0.836 22 H 0.162 0.838 23 H 0.260 0.740 24 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.061 -2.481 -1.141 4.102 hybrid contribution 0.083 -0.004 -0.473 0.481 sum 3.143 -2.486 -1.615 4.321 Atomic orbital electron populations 1.70369 1.08967 1.30587 1.31232 1.27244 0.96522 1.05111 0.93231 0.84502 0.77664 0.72374 0.80854 1.17090 1.19717 1.17184 1.21226 0.94078 0.81037 1.50445 0.82601 1.45225 1.04715 1.05857 1.30323 1.22576 0.99241 0.83998 1.20039 1.19807 0.91757 0.95397 1.16043 1.20286 0.98410 0.90209 0.97248 1.20648 0.90947 1.00360 1.10821 1.17708 0.85842 0.88243 1.01399 1.84707 1.36493 1.75838 1.34977 1.19812 0.94358 0.93551 1.11669 1.21402 0.95387 0.92403 1.03029 1.78750 0.89207 1.14336 1.36639 0.90186 0.79048 0.83566 0.83777 0.74021 0.87711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -42.95 11.72 21.68 0.25 -42.70 14 2 C 0.00 -0.20 5.50 84.99 0.47 0.27 14 3 Si 1.03 34.95 29.55 68.60 2.03 36.98 14 4 H -0.25 -7.77 7.11 99.48 0.71 -7.07 14 5 H -0.27 -9.14 7.11 99.48 0.71 -8.44 14 6 H -0.25 -7.84 7.11 99.48 0.71 -7.13 14 7 C -0.33 -16.71 10.17 84.08 0.86 -15.86 14 8 H 0.16 6.56 7.83 -2.91 -0.02 6.53 14 9 N -0.10 -5.71 3.66 -189.35 -0.69 -6.41 14 10 C -0.11 -5.05 11.46 84.16 0.96 -4.08 14 11 C -0.22 -10.68 6.32 -20.19 -0.13 -10.81 14 12 C -0.04 -1.59 10.09 22.41 0.23 -1.37 14 13 C -0.21 -7.62 9.82 22.12 0.22 -7.41 14 14 C 0.12 4.69 6.63 22.29 0.15 4.84 14 15 O -0.51 -17.03 13.44 -91.72 -1.23 -18.26 14 16 C -0.17 -8.30 9.98 22.45 0.22 -8.07 14 17 C 0.02 1.12 7.48 42.05 0.31 1.43 14 18 N -0.35 -21.32 10.30 -48.68 -0.50 -21.83 14 19 H 0.29 14.20 8.30 -92.72 -0.77 13.43 14 20 H 0.19 7.33 8.06 -2.92 -0.02 7.30 14 21 H 0.15 4.44 8.06 -2.91 -0.02 4.42 14 22 H 0.14 4.21 8.06 -2.91 -0.02 4.19 14 23 H 0.40 8.99 9.06 -74.06 -0.67 8.32 14 24 H 0.10 5.03 8.06 -2.91 -0.02 5.00 14 Total: -1.00 -70.41 224.88 3.71 -66.70 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.56 Total: 26.56 kcal Atomic # 6 Polarization: -44.34 SS G_CDS: 3.29 Total: -41.06 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -0.94 Total: -70.93 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -1.23 Total: -18.26 kcal Atomic # 14 Polarization: 34.95 SS G_CDS: 2.03 Total: 36.98 kcal Total: -70.41 3.71 -66.70 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261195305.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.887 kcal (2) G-P(sol) polarization free energy of solvation -70.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds