Wall clock time and date at job start Thu Apr 9 2020 14:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00110 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99901 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.47294 * 180.02562 * 9 7 2 11 11 N 1.29356 * 125.68054 * 90.02438 * 10 9 7 12 12 N 1.26398 * 116.49979 * 179.97438 * 11 10 9 13 13 C 1.29532 * 116.44128 * 0.02562 * 12 11 10 14 14 Cl 1.73601 * 125.70822 * 179.97438 * 13 12 11 15 15 S 1.71207 * 125.68473 * 269.72234 * 10 9 7 16 16 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 17 17 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 18 18 H 1.09000 * 109.47722 * 300.00831 * 9 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 7 2.7203 -4.2184 1.0502 12 7 3.5308 -5.1671 0.8485 13 6 3.7810 -5.4589 -0.3885 14 17 4.8513 -6.7105 -0.9378 15 16 2.8742 -4.4081 -1.3911 16 1 -0.4849 0.8400 0.0004 17 1 0.6241 -2.5566 -0.8904 18 1 0.6246 -2.5571 0.8896 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261219510.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:19 Heat of formation + Delta-G solvation = 28.849660 kcal Electronic energy + Delta-G solvation = -8820.421901 eV Core-core repulsion = 6811.259736 eV Total energy + Delta-G solvation = -2009.162164 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 203.982 amu Computer time = -0.21 seconds Orbital eigenvalues (eV) -42.36844 -38.22640 -35.76259 -33.35934 -30.28406 -27.37679 -24.98781 -21.70183 -20.45017 -18.71558 -17.54955 -16.87138 -16.52076 -14.99843 -14.47950 -14.41736 -13.66341 -13.43630 -13.03922 -12.75298 -12.64250 -12.15630 -11.79427 -11.55228 -11.21098 -10.73038 -10.63370 -10.52137 -8.29079 -6.42772 -0.69570 -0.60347 0.22241 0.64173 1.37021 1.44284 1.45978 1.53956 2.38822 3.05305 3.39225 3.82072 4.33918 5.10640 5.20479 5.60703 5.93078 6.63444 7.26318 7.38847 8.81309 Molecular weight = 203.98amu Principal moments of inertia in cm(-1) A = 0.073345 B = 0.008345 C = 0.008147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.665585 B = 3354.680703 C = 3436.224998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.020 3.980 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.056 0.944 9 C 0.095 3.905 10 C 0.024 3.976 11 N -0.297 5.297 12 N -0.273 5.273 13 C -0.026 4.026 14 Cl 0.066 6.934 15 S 0.286 5.714 16 H 0.271 0.729 17 H 0.050 0.950 18 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.402 -8.448 -6.216 12.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.180 4.180 3 Si 0.789 3.211 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.580 4.580 8 H 0.074 0.926 9 C 0.054 3.946 10 C -0.253 4.253 11 N -0.136 5.136 12 N -0.113 5.113 13 C -0.330 4.330 14 Cl 0.093 6.907 15 S 0.527 5.473 16 H 0.080 0.920 17 H 0.068 0.932 18 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 6.395 -8.556 -5.923 12.214 hybrid contribution 0.353 0.624 0.378 0.810 sum 6.748 -7.932 -5.544 11.798 Atomic orbital electron populations 1.70012 1.07410 1.28671 1.49591 1.25759 0.95762 1.02712 0.93801 0.85490 0.78393 0.77992 0.79194 1.18619 1.20229 1.19995 1.21101 0.93089 0.90287 1.53487 0.92614 1.17865 0.90896 0.86649 0.99155 1.29988 1.01918 1.01549 0.91891 1.71591 1.09097 1.05391 1.27514 1.71434 1.11547 1.10588 1.17768 1.29809 1.05398 1.02930 0.94884 1.98401 1.59770 1.46141 1.86372 1.83360 1.34071 1.22009 1.07853 0.91958 0.93212 0.94783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.27 13.29 21.45 0.28 -50.99 13 2 C 0.02 1.08 5.46 84.65 0.46 1.54 13 3 Si 0.97 41.75 29.54 68.60 2.03 43.77 13 4 H -0.26 -10.74 7.11 99.48 0.71 -10.04 13 5 H -0.28 -11.61 7.11 99.48 0.71 -10.90 13 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 13 7 C -0.54 -28.85 9.09 25.60 0.23 -28.62 13 8 H 0.06 2.96 7.74 -2.91 -0.02 2.93 13 9 C 0.10 4.71 5.58 29.10 0.16 4.87 13 10 C 0.02 1.02 6.72 88.48 0.59 1.61 13 11 N -0.30 -13.49 11.65 -50.88 -0.59 -14.08 13 12 N -0.27 -11.07 11.66 -53.24 -0.62 -11.69 13 13 C -0.03 -0.84 8.20 130.58 1.07 0.23 13 14 Cl 0.07 1.63 29.33 -2.72 -0.08 1.55 13 15 S 0.29 9.20 23.06 -56.49 -1.30 7.90 13 16 H 0.27 14.23 8.31 -92.71 -0.77 13.46 13 17 H 0.05 2.41 8.14 -2.39 -0.02 2.39 13 18 H 0.03 1.84 8.14 -2.39 -0.02 1.82 13 Total: -1.00 -58.91 207.23 3.53 -55.39 By element: Atomic # 1 Polarization: -12.77 SS G_CDS: 1.29 Total: -11.49 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 2.52 Total: -20.37 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -0.93 Total: -76.76 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Atomic # 16 Polarization: 9.20 SS G_CDS: -1.30 Total: 7.90 kcal Atomic # 17 Polarization: 1.63 SS G_CDS: -0.08 Total: 1.55 kcal Total: -58.91 3.53 -55.39 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261219510.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.236 kcal (2) G-P(sol) polarization free energy of solvation -58.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.21 seconds