Wall clock time and date at job start Thu Apr 9 2020 14:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31020 * 1 3 3 Si 1.86796 * 120.00103 * 2 1 4 4 H 1.48497 * 109.47244 * 359.97438 * 3 2 1 5 5 H 1.48507 * 109.47178 * 120.00071 * 3 2 1 6 6 H 1.48505 * 109.47009 * 239.99799 * 3 2 1 7 7 C 1.39820 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00307 * 3.91877 * 7 2 1 9 9 C 1.39505 * 120.00008 * 183.91581 * 7 2 1 10 10 N 1.33414 * 125.64304 * 5.91954 * 9 7 2 11 11 C 1.32120 * 109.91750 * 179.81571 * 10 9 7 12 12 C 1.39901 * 108.10088 * 0.43717 * 11 10 9 13 13 C 1.39779 * 133.33041 * 179.68585 * 12 11 10 14 14 C 1.38524 * 119.04855 * 180.02562 * 13 12 11 15 15 O 1.35635 * 120.31168 * 180.02562 * 14 13 12 16 16 C 1.40756 * 119.36945 * 359.97438 * 14 13 12 17 17 C 1.35112 * 120.32733 * 0.02626 * 16 14 13 18 18 N 1.36406 * 120.78523 * 359.97438 * 17 16 14 19 19 H 0.97001 * 119.99978 * 174.83700 * 1 2 3 20 20 H 1.08001 * 125.94816 * 180.13253 * 11 10 9 21 21 H 1.08002 * 120.46861 * 0.05375 * 13 12 11 22 22 H 0.96705 * 114.00280 * 269.97187 * 15 14 13 23 23 H 1.08005 * 119.83462 * 180.02562 * 16 14 13 24 24 H 1.07999 * 119.60553 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 1.2793 2.7464 -0.0006 5 1 3.0980 1.6963 1.2125 6 1 3.0980 1.6963 -1.2125 7 6 2.0093 -1.2109 0.0005 8 1 1.4712 -2.1452 -0.0630 9 6 3.4019 -1.2123 0.0830 10 7 4.1703 -0.1391 0.2769 11 6 5.4421 -0.4956 0.3072 12 6 5.5103 -1.8794 0.1127 13 6 6.5710 -2.7873 0.0446 14 6 6.2957 -4.1287 -0.1645 15 8 7.3052 -5.0318 -0.2345 16 6 4.9584 -4.5456 -0.3027 17 6 3.9527 -3.6462 -0.2326 18 7 4.2125 -2.3229 -0.0270 19 1 -0.4850 -0.8366 -0.0756 20 1 6.2830 0.1666 0.4517 21 1 7.5904 -2.4477 0.1539 22 1 7.6495 -5.1686 -1.1278 23 1 4.7352 -5.5897 -0.4656 24 1 2.9309 -3.9788 -0.3406 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261269354.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:44 Heat of formation + Delta-G solvation = 23.146208 kcal Electronic energy + Delta-G solvation = -12533.084640 eV Core-core repulsion = 10219.188229 eV Total energy + Delta-G solvation = -2313.896411 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 204.064 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.24369 -37.93193 -35.24784 -33.73561 -31.61578 -29.81230 -28.20274 -24.52566 -22.86759 -21.27387 -20.63542 -18.24939 -17.67751 -16.45682 -15.62263 -14.97337 -14.51376 -14.23489 -13.78220 -13.37360 -12.94206 -12.27219 -12.07738 -11.78744 -11.31807 -10.69971 -10.38007 -10.10591 -9.76333 -9.68135 -9.12428 -8.34541 -8.24644 -7.45665 -6.90144 -4.55808 1.55694 2.13795 3.47464 3.55077 3.80131 3.99444 4.05452 4.22767 4.37794 4.70457 5.12812 5.26599 5.59321 5.70762 5.85071 6.01589 6.38256 6.50729 6.71028 6.86142 7.06405 7.33787 7.53168 7.64408 7.99397 8.12154 8.43470 8.60621 9.18830 9.96288 Molecular weight = 204.06amu Principal moments of inertia in cm(-1) A = 0.061473 B = 0.010730 C = 0.009198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.377604 B = 2608.790999 C = 3043.482957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.058 3.942 3 Si 1.128 2.872 4 H -0.318 1.318 5 H -0.267 1.267 6 H -0.284 1.284 7 C -0.488 4.488 8 H 0.082 0.918 9 C 0.356 3.644 10 N -0.557 5.557 11 C 0.039 3.961 12 C -0.107 4.107 13 C -0.066 4.066 14 C 0.026 3.974 15 O -0.495 6.495 16 C -0.199 4.199 17 C 0.105 3.895 18 N -0.425 5.425 19 H 0.283 0.717 20 H 0.160 0.840 21 H 0.128 0.872 22 H 0.371 0.629 23 H 0.130 0.870 24 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.640 -4.822 -2.060 9.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.164 4.164 3 Si 0.959 3.041 4 H -0.249 1.249 5 H -0.193 1.193 6 H -0.211 1.211 7 C -0.527 4.527 8 H 0.101 0.899 9 C 0.122 3.878 10 N -0.279 5.279 11 C -0.118 4.118 12 C -0.210 4.210 13 C -0.086 4.086 14 C -0.021 4.021 15 O -0.303 6.303 16 C -0.222 4.222 17 C -0.017 4.017 18 N -0.103 5.103 19 H 0.094 0.906 20 H 0.178 0.822 21 H 0.146 0.854 22 H 0.225 0.775 23 H 0.148 0.852 24 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.891 -2.511 -1.283 7.446 hybrid contribution 0.501 -2.922 -0.693 3.045 sum 7.392 -5.433 -1.976 9.384 Atomic orbital electron populations 1.70753 1.07567 1.32550 1.32371 1.27435 0.95256 1.04979 0.88692 0.82412 0.71482 0.69989 0.80252 1.24925 1.19299 1.21133 1.19384 0.87431 0.97295 1.48574 0.89948 1.20356 0.92368 0.78359 0.96722 1.69523 1.02449 1.26058 1.29909 1.22367 0.94579 0.90314 1.04503 1.18811 0.84176 0.95081 1.22935 1.20643 0.97361 0.90867 0.99761 1.18076 0.86550 0.87577 1.09852 1.84789 1.51272 1.61373 1.32905 1.20508 0.91904 0.99062 1.10720 1.21102 0.99599 0.82062 0.98924 1.42662 1.07669 1.05889 1.54123 0.90612 0.82245 0.85411 0.77509 0.85168 0.83570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.63 13.67 55.54 0.76 -20.87 14 2 C 0.06 1.55 5.52 -17.31 -0.10 1.45 14 3 Si 1.13 27.40 25.83 -169.99 -4.39 23.01 14 4 H -0.32 -7.53 7.11 56.52 0.40 -7.13 14 5 H -0.27 -6.54 6.74 56.52 0.38 -6.16 14 6 H -0.28 -6.95 7.11 56.52 0.40 -6.54 14 7 C -0.49 -13.03 9.63 -38.52 -0.37 -13.40 14 8 H 0.08 2.16 7.90 -52.49 -0.41 1.74 14 9 C 0.36 9.31 7.23 -155.04 -1.12 8.19 14 10 N -0.56 -14.32 6.26 -11.89 -0.07 -14.39 14 11 C 0.04 0.87 12.01 -16.81 -0.20 0.67 14 12 C -0.11 -2.37 6.80 -83.95 -0.57 -2.94 14 13 C -0.07 -1.24 10.11 -38.90 -0.39 -1.63 14 14 C 0.03 0.47 6.77 -38.53 -0.26 0.21 14 15 O -0.50 -7.59 13.51 -18.61 -0.25 -7.85 14 16 C -0.20 -3.56 9.94 -39.74 -0.40 -3.95 14 17 C 0.11 2.12 10.80 -16.63 -0.18 1.94 14 18 N -0.42 -10.02 3.00 -60.29 -0.18 -10.20 14 19 H 0.28 7.21 8.73 -40.82 -0.36 6.86 14 20 H 0.16 2.92 8.06 -52.49 -0.42 2.49 14 21 H 0.13 2.04 8.06 -52.49 -0.42 1.62 14 22 H 0.37 3.82 9.06 45.56 0.41 4.23 14 23 H 0.13 1.94 8.06 -52.48 -0.42 1.52 14 24 H 0.15 2.65 7.91 -52.49 -0.42 2.23 14 LS Contribution 219.79 15.07 3.31 3.31 Total: -1.00 -30.32 219.79 -5.27 -35.60 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -0.86 Total: 0.86 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -3.59 Total: -9.47 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.50 Total: -45.46 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.25 Total: -7.85 kcal Atomic # 14 Polarization: 27.40 SS G_CDS: -4.39 Total: 23.01 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -30.32 -5.27 -35.60 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261269354.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.742 kcal (2) G-P(sol) polarization free energy of solvation -30.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds