Wall clock time and date at job start Thu Apr 9 2020 14:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48053 * 110.99824 * 2 1 4 4 C 1.51084 * 105.63454 * 212.89534 * 3 2 1 5 5 C 1.37821 * 131.86330 * 197.55580 * 4 3 2 6 6 C 1.41110 * 118.21146 * 179.97438 * 5 4 3 7 7 C 1.41407 * 120.73592 * 180.02562 * 6 5 4 8 8 H 1.07995 * 119.99745 * 335.72160 * 7 6 5 9 9 C 1.39952 * 119.99948 * 155.71524 * 7 6 5 10 10 N 1.30822 * 120.00442 * 342.43425 * 9 7 6 11 11 Si 1.86803 * 119.99788 * 162.43211 * 9 7 6 12 12 H 1.48499 * 109.47368 * 94.68341 * 11 9 7 13 13 H 1.48490 * 109.47398 * 214.68484 * 11 9 7 14 14 H 1.48507 * 109.47218 * 334.68661 * 11 9 7 15 15 C 1.40760 * 118.53097 * 359.97438 * 6 5 4 16 16 N 1.31380 * 120.51148 * 0.02562 * 15 6 5 17 17 C 1.32257 * 122.18194 * 0.02562 * 16 15 6 18 18 C 1.48004 * 111.00782 * 244.92287 * 2 1 3 19 19 H 1.08999 * 109.46930 * 60.00378 * 1 2 3 20 20 H 1.08999 * 109.46895 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47278 * 299.99823 * 1 2 3 22 22 H 1.09001 * 110.21550 * 93.85236 * 3 2 1 23 23 H 1.09003 * 110.21496 * 331.93624 * 3 2 1 24 24 H 1.07996 * 120.89462 * 0.21265 * 5 4 3 25 25 H 0.97000 * 120.00039 * 179.97438 * 10 9 7 26 26 H 1.08000 * 119.74234 * 180.02562 * 15 6 5 27 27 H 1.09000 * 110.20758 * 28.10592 * 18 2 1 28 28 H 1.09004 * 110.17722 * 266.25140 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9996 1.3822 0.0000 4 6 3.2860 1.3246 -0.7902 5 6 4.3571 2.1884 -0.8680 6 6 5.4315 1.8441 -1.7156 7 6 6.5574 2.6911 -1.8356 8 1 6.4656 3.7453 -1.6195 9 6 7.7908 2.1633 -2.2341 10 7 8.0038 0.8744 -2.1652 11 14 9.1330 3.2993 -2.8645 12 1 10.0417 3.6600 -1.7468 13 1 9.9063 2.6095 -3.9281 14 1 8.5181 4.5318 -3.4198 15 6 5.3581 0.6384 -2.4382 16 7 4.3101 -0.1455 -2.3231 17 6 3.2895 0.1538 -1.5370 18 6 1.9996 -0.5856 -1.2514 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 2.1987 1.7092 1.0205 23 1 1.2919 2.0573 -0.4812 24 1 4.3754 3.1023 -0.2928 25 1 8.8585 0.5086 -2.4418 26 1 6.1696 0.3556 -3.0924 27 1 1.2923 -0.4352 -2.0670 28 1 2.1969 -1.6489 -1.1149 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214057322.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:40 Heat of formation + Delta-G solvation = 35.291398 kcal Electronic energy + Delta-G solvation = -12644.723086 eV Core-core repulsion = 10467.186424 eV Total energy + Delta-G solvation = -2177.536662 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 204.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.39021 -36.66129 -33.89509 -31.31263 -30.40858 -27.75313 -26.25852 -24.66911 -21.89939 -20.62523 -20.31401 -17.29776 -15.64712 -15.32781 -15.06024 -14.78654 -14.01824 -13.43958 -12.94652 -12.58180 -12.36734 -11.94805 -11.76706 -11.40223 -11.33882 -11.07149 -11.03896 -10.83250 -10.66308 -10.17620 -9.41844 -8.43694 -8.21322 -7.77833 -7.30859 -6.95324 -4.51781 2.57024 2.81324 3.00591 3.04492 3.12130 3.81978 4.41183 4.53102 5.14150 5.35388 5.48772 5.56579 5.65970 5.91587 5.97129 6.01545 6.14566 6.31781 6.54821 6.73721 6.91189 7.01896 7.12206 7.19448 7.43661 7.57199 7.73331 8.01143 8.26247 8.64154 8.67304 9.68953 10.01865 Molecular weight = 204.10amu Principal moments of inertia in cm(-1) A = 0.083246 B = 0.008045 C = 0.007523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.271938 B = 3479.720673 C = 3720.936009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.513 5.513 3 C 0.085 3.915 4 C -0.127 4.127 5 C -0.179 4.179 6 C 0.067 3.933 7 C -0.448 4.448 8 H 0.082 0.918 9 C 0.074 3.926 10 N -0.786 5.786 11 Si 0.914 3.086 12 H -0.269 1.269 13 H -0.273 1.273 14 H -0.259 1.259 15 C 0.049 3.951 16 N -0.463 5.463 17 C -0.037 4.037 18 C 0.112 3.888 19 H 0.027 0.973 20 H 0.068 0.932 21 H 0.067 0.933 22 H 0.078 0.922 23 H 0.048 0.952 24 H 0.102 0.898 25 H 0.286 0.714 26 H 0.154 0.846 27 H 0.043 0.957 28 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.924 1.487 1.038 6.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.236 5.236 3 C -0.043 4.043 4 C -0.129 4.129 5 C -0.205 4.205 6 C 0.062 3.938 7 C -0.478 4.478 8 H 0.101 0.899 9 C -0.145 4.145 10 N -0.410 5.410 11 Si 0.738 3.262 12 H -0.194 1.194 13 H -0.198 1.198 14 H -0.183 1.183 15 C -0.116 4.116 16 N -0.171 5.171 17 C -0.172 4.172 18 C -0.016 4.016 19 H 0.045 0.955 20 H 0.087 0.913 21 H 0.086 0.914 22 H 0.097 0.903 23 H 0.066 0.934 24 H 0.120 0.880 25 H 0.097 0.903 26 H 0.171 0.829 27 H 0.062 0.938 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.674 0.209 1.037 5.772 hybrid contribution 0.455 1.700 -0.387 1.801 sum -5.219 1.908 0.650 5.595 Atomic orbital electron populations 1.22551 0.88218 1.01911 1.00536 1.65142 1.07565 1.15697 1.35205 1.21397 0.93723 0.89531 0.99624 1.20817 0.95431 0.97402 0.99299 1.20649 0.95563 1.00751 1.03540 1.18471 0.92192 0.93673 0.89438 1.19525 0.92653 0.96164 1.39416 0.89944 1.25999 1.00086 0.95553 0.92859 1.69771 1.25016 1.13146 1.33104 0.86192 0.79791 0.80882 0.79322 1.19393 1.19767 1.18281 1.22915 0.94633 0.93206 1.00860 1.66232 1.00146 1.33131 1.17550 1.20684 0.96566 0.96508 1.03467 1.21054 0.92462 0.98753 0.89328 0.95458 0.91325 0.91441 0.90330 0.93373 0.87975 0.90265 0.82883 0.93849 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.35 60.07 0.56 0.79 15 2 N -0.51 -9.28 5.76 -243.17 -1.40 -10.68 15 3 C 0.09 1.61 6.61 -4.15 -0.03 1.58 15 4 C -0.13 -2.98 6.26 -104.35 -0.65 -3.63 15 5 C -0.18 -4.46 9.94 -38.65 -0.38 -4.84 15 6 C 0.07 1.79 5.59 -106.65 -0.60 1.20 15 7 C -0.45 -11.55 9.09 -37.73 -0.34 -11.89 15 8 H 0.08 2.01 7.90 -52.49 -0.41 1.60 15 9 C 0.07 1.80 5.16 -17.34 -0.09 1.71 15 10 N -0.79 -19.86 10.96 55.55 0.61 -19.25 15 11 Si 0.91 17.91 29.59 -169.99 -5.03 12.88 15 12 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 13 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 14 H -0.26 -5.03 7.11 56.52 0.40 -4.63 15 15 C 0.05 1.32 9.90 -16.79 -0.17 1.16 15 16 N -0.46 -12.35 10.33 -8.48 -0.09 -12.44 15 17 C -0.04 -0.90 7.45 -81.84 -0.61 -1.51 15 18 C 0.11 2.23 6.61 -4.03 -0.03 2.21 15 19 H 0.03 0.35 7.91 -51.93 -0.41 -0.06 15 20 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 21 H 0.07 0.80 8.14 -51.93 -0.42 0.37 15 22 H 0.08 1.39 8.14 -51.93 -0.42 0.97 15 23 H 0.05 0.83 7.77 -51.93 -0.40 0.43 15 24 H 0.10 2.32 8.06 -52.49 -0.42 1.90 15 25 H 0.29 6.51 8.30 -40.82 -0.34 6.17 15 26 H 0.15 4.21 6.16 -52.49 -0.32 3.89 15 27 H 0.04 0.80 7.70 -51.93 -0.40 0.40 15 28 H 0.08 1.51 8.14 -51.93 -0.42 1.08 15 LS Contribution 240.27 15.07 3.62 3.62 Total: -1.00 -28.38 240.27 -7.82 -36.20 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -3.20 Total: 2.91 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -2.33 Total: -13.23 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: -0.88 Total: -42.37 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -28.38 -7.82 -36.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214057322.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.490 kcal (2) G-P(sol) polarization free energy of solvation -28.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds