Wall clock time and date at job start Thu Apr 9 2020 14:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30789 * 1 3 3 Si 1.86798 * 120.00209 * 2 1 4 4 H 1.48496 * 109.47005 * 240.00282 * 3 2 1 5 5 H 1.48500 * 109.46899 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47210 * 119.99757 * 3 2 1 7 7 C 1.40037 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99832 * 162.32556 * 7 2 1 9 9 C 1.40928 * 120.00101 * 342.60699 * 7 2 1 10 10 C 1.40987 * 120.09436 * 334.77874 * 9 7 2 11 11 C 1.36160 * 119.90331 * 179.78618 * 10 9 7 12 12 C 1.40185 * 120.09111 * 0.49658 * 11 10 9 13 13 C 1.47288 * 119.90259 * 179.75648 * 12 11 10 14 14 C 1.33090 * 119.99494 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99431 * 179.97438 * 14 13 12 16 16 O 1.42902 * 109.47121 * 135.00314 * 15 14 13 17 17 C 1.40185 * 120.19601 * 359.73740 * 12 11 10 18 18 C 1.36149 * 120.09825 * 0.02562 * 17 12 11 19 19 H 0.97001 * 119.99981 * 0.02562 * 1 2 3 20 20 H 1.08007 * 120.05203 * 0.02562 * 10 9 7 21 21 H 1.08000 * 119.95409 * 180.24835 * 11 10 9 22 22 H 1.07989 * 120.00114 * 179.97438 * 13 12 11 23 23 H 1.07990 * 120.00289 * 0.02562 * 14 13 12 24 24 H 1.09004 * 109.47372 * 254.99843 * 15 14 13 25 25 H 1.08998 * 109.47224 * 15.00170 * 15 14 13 26 26 H 0.96698 * 114.00461 * 179.97438 * 16 15 14 27 27 H 1.08001 * 119.95323 * 180.02562 * 17 12 11 28 28 H 1.08001 * 120.05512 * 179.97438 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.0956 1.6963 -1.2125 5 1 1.2769 2.7464 -0.0006 6 1 3.0957 1.6964 1.2125 7 6 2.0080 -1.2128 0.0005 8 1 3.0497 -1.2350 -0.2834 9 6 1.3517 -2.4052 0.3659 10 6 0.2231 -2.3609 1.2099 11 6 -0.4106 -3.5150 1.5569 12 6 0.0637 -4.7467 1.0846 13 6 -0.6219 -5.9930 1.4670 14 6 -1.6897 -5.9486 2.2601 15 6 -2.3915 -7.2237 2.6508 16 8 -2.6758 -7.2011 4.0511 17 6 1.1884 -4.7958 0.2493 18 6 1.8253 -3.6463 -0.1066 19 1 -0.4850 0.8401 -0.0004 20 1 -0.1405 -1.4127 1.5775 21 1 -1.2776 -3.4817 2.2001 22 1 -0.2581 -6.9427 1.1038 23 1 -2.0538 -4.9988 2.6229 24 1 -3.3235 -7.3113 2.0923 25 1 -1.7505 -8.0755 2.4238 26 1 -3.1286 -7.9924 4.3734 27 1 1.5502 -5.7469 -0.1126 28 1 2.6919 -3.6849 -0.7499 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223571955.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:04 Heat of formation + Delta-G solvation = -46.230792 kcal Electronic energy + Delta-G solvation = -12071.107502 eV Core-core repulsion = 9857.743022 eV Total energy + Delta-G solvation = -2213.364480 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 204.089 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.61395 -37.91490 -36.06312 -34.36143 -31.40440 -31.23154 -28.03895 -25.44870 -23.17742 -22.44827 -20.08928 -19.31537 -18.21321 -17.41776 -16.60211 -15.78394 -15.63532 -15.09470 -14.80257 -14.23811 -13.99081 -13.64094 -13.29763 -13.09848 -12.77205 -12.64357 -12.31703 -11.91163 -11.51964 -11.33530 -11.20791 -11.05259 -10.42831 -9.50698 -8.87643 -8.67544 -6.34668 0.42478 1.17300 1.34711 1.39153 1.49677 1.88731 2.17217 2.77942 3.60413 3.76190 4.13689 4.26842 4.45843 4.48802 4.58689 4.67225 4.85013 4.97536 5.07453 5.27133 5.34821 5.64424 5.71067 5.80067 6.03041 6.06534 6.29800 6.36033 6.62323 6.84079 6.97524 7.00099 8.23411 Molecular weight = 204.09amu Principal moments of inertia in cm(-1) A = 0.063691 B = 0.006647 C = 0.006174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.515117 B = 4211.380728 C = 4533.940059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.033 3.967 3 Si 0.988 3.012 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.489 4.489 8 H 0.083 0.917 9 C 0.085 3.915 10 C -0.198 4.198 11 C -0.090 4.090 12 C -0.214 4.214 13 C -0.061 4.061 14 C -0.222 4.222 15 C 0.121 3.879 16 O -0.596 6.596 17 C -0.068 4.068 18 C -0.247 4.247 19 H 0.292 0.708 20 H 0.100 0.900 21 H 0.101 0.899 22 H 0.130 0.870 23 H 0.090 0.910 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.397 0.603 27 H 0.126 0.874 28 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.199 -7.289 2.143 7.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.184 4.184 3 Si 0.808 3.192 4 H -0.180 1.180 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.517 4.517 8 H 0.101 0.899 9 C 0.083 3.917 10 C -0.217 4.217 11 C -0.108 4.108 12 C -0.215 4.215 13 C -0.079 4.079 14 C -0.240 4.240 15 C 0.045 3.955 16 O -0.404 6.404 17 C -0.086 4.086 18 C -0.267 4.267 19 H 0.102 0.898 20 H 0.118 0.882 21 H 0.119 0.881 22 H 0.148 0.852 23 H 0.108 0.892 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.247 0.753 27 H 0.144 0.856 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.128 -6.561 2.071 7.202 hybrid contribution -0.091 0.456 -0.079 0.471 sum -2.219 -6.105 1.992 6.795 Atomic orbital electron populations 1.69864 1.09290 1.31096 1.33794 1.26923 0.95525 1.04944 0.90997 0.85166 0.78756 0.75044 0.80271 1.17965 1.19053 1.18387 1.19917 0.98556 0.92454 1.40796 0.89927 1.18085 0.91552 0.93413 0.88663 1.20963 1.00794 0.97069 1.02879 1.20843 0.98278 0.92888 0.98818 1.18735 1.01317 0.92765 1.08655 1.21613 0.93630 0.96066 0.96611 1.23044 0.99339 0.98679 1.02953 1.20993 0.98515 0.94613 0.81426 1.86503 1.82108 1.47442 1.24388 1.20800 0.94410 0.97508 0.95925 1.20927 1.04849 0.93138 1.07766 0.89752 0.88218 0.88104 0.85188 0.89175 0.91622 0.91569 0.75307 0.85579 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.97 10.96 21.84 0.24 -42.73 15 2 C 0.03 1.64 5.14 85.28 0.44 2.08 15 3 Si 0.99 37.76 29.60 68.60 2.03 39.79 15 4 H -0.26 -9.35 7.11 99.48 0.71 -8.65 15 5 H -0.27 -9.60 7.11 99.48 0.71 -8.90 15 6 H -0.26 -9.74 7.11 99.48 0.71 -9.03 15 7 C -0.49 -26.49 9.03 23.37 0.21 -26.28 15 8 H 0.08 4.24 7.91 -2.91 -0.02 4.22 15 9 C 0.09 4.73 5.57 -21.27 -0.12 4.61 15 10 C -0.20 -10.88 8.62 22.46 0.19 -10.69 15 11 C -0.09 -4.49 9.33 22.26 0.21 -4.28 15 12 C -0.21 -9.68 5.89 -19.95 -0.12 -9.80 15 13 C -0.06 -2.24 9.50 23.50 0.22 -2.01 15 14 C -0.22 -7.72 9.33 24.53 0.23 -7.49 15 15 C 0.12 3.09 7.47 71.24 0.53 3.62 15 16 O -0.60 -15.45 13.64 -148.98 -2.03 -17.48 15 17 C -0.07 -3.06 9.71 22.26 0.22 -2.84 15 18 C -0.25 -12.33 9.73 22.46 0.22 -12.11 15 19 H 0.29 13.82 8.30 -92.71 -0.77 13.05 15 20 H 0.10 5.70 6.18 -2.91 -0.02 5.68 15 21 H 0.10 4.70 6.13 -2.91 -0.02 4.68 15 22 H 0.13 3.87 7.93 -2.92 -0.02 3.85 15 23 H 0.09 3.53 6.01 -2.92 -0.02 3.51 15 24 H 0.07 1.42 8.14 -2.39 -0.02 1.40 15 25 H 0.07 1.39 7.89 -2.39 -0.02 1.37 15 26 H 0.40 5.49 9.12 -74.06 -0.68 4.81 15 27 H 0.13 4.61 8.06 -2.91 -0.02 4.59 15 28 H 0.10 4.79 8.06 -2.91 -0.02 4.77 15 Total: -1.00 -63.21 248.54 2.96 -60.25 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.49 Total: 25.36 kcal Atomic # 6 Polarization: -67.43 SS G_CDS: 2.23 Total: -65.20 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: 0.24 Total: -42.73 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -2.03 Total: -17.48 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Total: -63.21 2.96 -60.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223571955.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.016 kcal (2) G-P(sol) polarization free energy of solvation -63.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds