Wall clock time and date at job start Thu Apr 9 2020 14:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86798 * 119.99905 * 2 1 4 4 H 1.48504 * 109.46809 * 269.99983 * 3 2 1 5 5 H 1.48498 * 109.47348 * 29.99515 * 3 2 1 6 6 H 1.48497 * 109.47596 * 150.00046 * 3 2 1 7 7 C 1.39942 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00001 * 197.85192 * 7 2 1 9 9 C 1.41396 * 120.00320 * 17.85953 * 7 2 1 10 10 C 1.40738 * 120.23936 * 24.38178 * 9 7 2 11 11 C 1.37598 * 119.73833 * 179.97438 * 10 9 7 12 12 C 1.38658 * 120.25336 * 0.27195 * 11 10 9 13 13 C 1.38607 * 120.49725 * 359.45075 * 12 11 10 14 14 C 1.50704 * 119.87709 * 180.25849 * 13 12 11 15 15 C 1.53001 * 109.46692 * 270.29487 * 14 13 12 16 16 C 1.50700 * 109.46759 * 179.97438 * 15 14 13 17 17 O 1.20762 * 120.00106 * 125.00217 * 16 15 14 18 18 C 1.37640 * 120.25120 * 0.54951 * 13 12 11 19 19 H 0.96999 * 120.00195 * 0.02562 * 1 2 3 20 20 H 1.07994 * 120.13165 * 359.97438 * 10 9 7 21 21 H 1.08010 * 119.87364 * 180.02562 * 11 10 9 22 22 H 1.07997 * 119.74663 * 179.72796 * 12 11 10 23 23 H 1.09000 * 109.46930 * 30.28934 * 14 13 12 24 24 H 1.08995 * 109.47686 * 150.29208 * 14 13 12 25 25 H 1.09000 * 109.46981 * 299.99415 * 15 14 13 26 26 H 1.08995 * 109.47494 * 59.99984 * 15 14 13 27 27 H 1.08001 * 120.00287 * 304.99741 * 16 15 14 28 28 H 1.08002 * 120.12915 * 179.75046 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.6999 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0491 -1.2343 0.2873 9 6 1.3522 -2.4072 -0.3745 10 6 0.2208 -2.3626 -1.2103 11 6 -0.4092 -3.5321 -1.5692 12 6 0.0633 -4.7506 -1.1062 13 6 1.1801 -4.8068 -0.2871 14 6 1.6851 -6.1393 0.2034 15 6 1.0033 -6.4866 1.5283 16 6 1.5078 -7.8194 2.0185 17 8 1.9841 -7.9152 3.1241 18 6 1.8262 -3.6497 0.0848 19 1 -0.4850 0.8400 -0.0004 20 1 -0.1516 -1.4143 -1.5686 21 1 -1.2774 -3.5004 -2.2109 22 1 -0.4400 -5.6632 -1.3894 23 1 1.4575 -6.9082 -0.5349 24 1 2.7635 -6.0867 0.3526 25 1 1.2309 -5.7177 2.2666 26 1 -0.0751 -6.5393 1.3791 27 1 1.4433 -8.6889 1.3812 28 1 2.6938 -3.6955 0.7263 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238614604.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:17 Heat of formation + Delta-G solvation = -53.133935 kcal Electronic energy + Delta-G solvation = -12209.523185 eV Core-core repulsion = 9995.859362 eV Total energy + Delta-G solvation = -2213.663823 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 204.089 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.16190 -39.40319 -36.03290 -34.37956 -31.70279 -30.46118 -27.19450 -25.64279 -22.57602 -22.18268 -21.55969 -18.81540 -17.30110 -17.15996 -16.45553 -16.10187 -15.79025 -15.29397 -15.10494 -14.29574 -14.02199 -13.54230 -13.47165 -13.19878 -12.86974 -12.66048 -12.30880 -12.10659 -11.84293 -11.45021 -11.22566 -11.02134 -10.54809 -9.36461 -9.08309 -8.63981 -6.35026 0.97955 1.02712 1.20476 1.36136 1.49183 1.52731 2.19845 2.72874 3.49150 3.73136 4.08682 4.27228 4.39078 4.51432 4.69751 4.79870 4.88602 4.99791 5.08434 5.14316 5.32606 5.35540 5.55913 5.74378 6.06539 6.13637 6.23175 6.42149 6.51539 6.72926 6.95511 7.06825 8.33370 Molecular weight = 204.09amu Principal moments of inertia in cm(-1) A = 0.043900 B = 0.007551 C = 0.006791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.655832 B = 3707.133816 C = 4121.964813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.035 3.965 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.507 4.507 8 H 0.070 0.930 9 C 0.076 3.924 10 C -0.196 4.196 11 C -0.112 4.112 12 C -0.228 4.228 13 C -0.062 4.062 14 C -0.057 4.057 15 C -0.183 4.183 16 C 0.366 3.634 17 O -0.519 6.519 18 C -0.241 4.241 19 H 0.287 0.713 20 H 0.097 0.903 21 H 0.110 0.890 22 H 0.129 0.871 23 H 0.107 0.893 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.111 0.889 27 H 0.151 0.849 28 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 -8.248 -1.855 8.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.537 4.537 8 H 0.088 0.912 9 C 0.074 3.926 10 C -0.215 4.215 11 C -0.130 4.130 12 C -0.247 4.247 13 C -0.062 4.062 14 C -0.094 4.094 15 C -0.220 4.220 16 C 0.226 3.774 17 O -0.394 6.394 18 C -0.261 4.261 19 H 0.098 0.902 20 H 0.115 0.885 21 H 0.128 0.872 22 H 0.147 0.853 23 H 0.125 0.875 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.129 0.871 27 H 0.166 0.834 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.192 -8.146 -1.239 8.242 hybrid contribution 0.150 1.342 0.056 1.351 sum 0.342 -6.805 -1.183 6.915 Atomic orbital electron populations 1.69883 1.08949 1.30407 1.36171 1.26730 0.95495 1.04439 0.91252 0.85227 0.79029 0.76032 0.79544 1.18573 1.19168 1.18428 1.19823 0.98240 0.92840 1.42794 0.91161 1.17980 0.92083 0.93128 0.89456 1.21301 1.00400 0.97292 1.02547 1.21030 0.98991 0.93276 0.99723 1.20688 1.00470 0.96903 1.06613 1.19659 0.95369 0.94365 0.96802 1.20310 0.99270 0.94164 0.95691 1.22469 1.03561 0.97667 0.98350 1.26633 0.69829 0.94310 0.86678 1.90393 1.35379 1.88642 1.24973 1.21057 1.04443 0.93129 1.07465 0.90235 0.88528 0.87153 0.85316 0.87484 0.91766 0.92919 0.87074 0.83354 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.48 10.95 21.83 0.24 -44.24 15 2 C 0.04 1.83 5.14 85.25 0.44 2.27 15 3 Si 0.98 39.35 29.60 68.60 2.03 41.38 15 4 H -0.26 -10.10 7.11 99.48 0.71 -9.39 15 5 H -0.27 -10.13 7.11 99.48 0.71 -9.43 15 6 H -0.26 -10.24 7.11 99.48 0.71 -9.53 15 7 C -0.51 -28.36 9.05 23.46 0.21 -28.14 15 8 H 0.07 3.83 7.91 -2.91 -0.02 3.81 15 9 C 0.08 4.18 5.58 -21.29 -0.12 4.06 15 10 C -0.20 -10.45 8.70 22.73 0.20 -10.25 15 11 C -0.11 -5.07 10.02 22.22 0.22 -4.85 15 12 C -0.23 -9.04 9.70 22.46 0.22 -8.82 15 13 C -0.06 -2.49 5.13 -19.92 -0.10 -2.59 15 14 C -0.06 -1.60 5.32 29.85 0.16 -1.44 15 15 C -0.18 -4.77 5.77 29.85 0.17 -4.59 15 16 C 0.37 7.87 11.19 71.24 0.80 8.67 15 17 O -0.52 -16.36 17.90 -1.46 -0.03 -16.39 15 18 C -0.24 -11.87 9.44 22.73 0.21 -11.65 15 19 H 0.29 13.91 8.30 -92.71 -0.77 13.14 15 20 H 0.10 5.43 6.15 -2.91 -0.02 5.41 15 21 H 0.11 4.36 8.06 -2.91 -0.02 4.34 15 22 H 0.13 4.03 8.06 -2.91 -0.02 4.01 15 23 H 0.11 2.20 8.09 -2.39 -0.02 2.18 15 24 H 0.06 1.81 8.08 -2.39 -0.02 1.79 15 25 H 0.05 1.74 8.12 -2.39 -0.02 1.72 15 26 H 0.11 2.62 8.14 -2.39 -0.02 2.60 15 27 H 0.15 1.60 8.06 -2.91 -0.02 1.58 15 28 H 0.09 4.19 8.06 -2.91 -0.02 4.17 15 Total: -1.00 -66.00 251.83 5.79 -60.21 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 1.14 Total: 16.39 kcal Atomic # 6 Polarization: -59.77 SS G_CDS: 2.41 Total: -57.36 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.24 Total: -44.24 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.03 Total: -16.39 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -66.00 5.79 -60.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238614604.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.077 kcal (2) G-P(sol) polarization free energy of solvation -66.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds