Wall clock time and date at job start Thu Apr 9 2020 14:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99962 * 2 1 4 4 H 1.48499 * 109.47030 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47103 * 299.99887 * 3 2 1 6 6 H 1.48501 * 109.47170 * 60.00147 * 3 2 1 7 7 C 1.37875 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99890 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99959 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.88367 * 297.93073 * 9 7 2 11 11 C 1.54349 * 110.82298 * 61.45153 * 9 7 2 12 12 C 1.51368 * 105.25468 * 144.62101 * 11 9 7 13 13 C 1.38504 * 130.38819 * 162.75985 * 12 11 9 14 14 C 1.38101 * 120.21275 * 179.97438 * 13 12 11 15 15 C 1.38262 * 119.93620 * 0.02562 * 14 13 12 16 16 C 1.38102 * 119.93134 * 359.97438 * 15 14 13 17 17 C 1.38217 * 109.76392 * 342.76039 * 12 11 9 18 18 C 1.51371 * 109.75426 * 0.02562 * 17 12 11 19 19 H 1.08997 * 110.30510 * 136.11465 * 18 17 12 20 20 O 1.42903 * 110.30347 * 258.26410 * 18 17 12 21 21 H 0.96999 * 119.99998 * 359.97438 * 1 2 3 22 22 H 1.09002 * 110.30534 * 25.64593 * 11 9 7 23 23 H 1.08997 * 110.29932 * 263.59167 * 11 9 7 24 24 H 1.07991 * 119.89243 * 0.02562 * 13 12 11 25 25 H 1.07996 * 120.03561 * 180.02562 * 14 13 12 26 26 H 1.07992 * 120.03149 * 179.97438 * 15 14 13 27 27 H 1.08006 * 119.88968 * 180.02562 * 16 15 14 28 28 H 0.96693 * 113.99834 * 298.54995 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6432 -2.5969 0.9001 11 6 0.3800 -2.6298 -1.2670 12 6 0.4172 -4.0999 -1.6260 13 6 -0.4088 -4.8429 -2.4530 14 6 -0.1790 -6.1926 -2.6337 15 6 0.8784 -6.8051 -1.9869 16 6 1.7031 -6.0658 -1.1619 17 6 1.4742 -4.7122 -0.9794 18 6 2.2194 -3.6957 -0.1412 19 1 2.4528 -4.1117 0.8388 20 8 3.4169 -3.2874 -0.8056 21 1 -0.4850 0.8400 0.0004 22 1 0.7985 -2.0321 -2.0768 23 1 -0.6429 -2.3176 -1.0568 24 1 -1.2347 -4.3651 -2.9588 25 1 -0.8246 -6.7692 -3.2795 26 1 1.0593 -7.8606 -2.1267 27 1 2.5291 -6.5449 -0.6573 28 1 4.0450 -4.0059 -0.9611 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238717361.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:24 Heat of formation + Delta-G solvation = -28.393351 kcal Electronic energy + Delta-G solvation = -12885.545804 eV Core-core repulsion = 10672.954813 eV Total energy + Delta-G solvation = -2212.590991 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 204.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.51737 -36.22653 -33.82785 -32.00569 -30.53501 -28.41365 -25.65472 -24.65527 -21.52649 -20.33229 -19.51778 -17.03834 -15.80199 -15.67343 -14.76624 -14.59039 -14.10461 -13.35219 -12.89531 -12.74325 -12.41934 -11.99143 -11.59029 -11.15429 -10.94981 -10.67954 -10.43504 -10.32312 -10.08935 -9.32001 -9.06007 -8.85566 -8.39815 -8.38130 -7.92760 -5.97192 -3.96484 1.80509 1.90340 3.35138 3.42869 3.49430 4.24232 4.50395 5.08508 5.31932 5.32242 5.43173 5.45540 5.55390 5.89716 5.98469 6.10571 6.38511 6.41319 6.67807 6.82254 6.91306 7.01230 7.13716 7.37439 7.48470 7.58199 7.76945 8.05296 8.33675 8.62434 9.10124 9.67222 11.13726 Molecular weight = 204.09amu Principal moments of inertia in cm(-1) A = 0.056100 B = 0.009866 C = 0.008804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.990459 B = 2837.267426 C = 3179.767914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.492 4.492 8 H 0.072 0.928 9 C 0.061 3.939 10 H 0.045 0.955 11 C -0.063 4.063 12 C -0.062 4.062 13 C -0.125 4.125 14 C -0.121 4.121 15 C -0.144 4.144 16 C -0.105 4.105 17 C -0.140 4.140 18 C 0.145 3.855 19 H 0.044 0.956 20 O -0.531 6.531 21 H 0.259 0.741 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.111 0.889 28 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.177 -10.095 -2.897 10.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.530 4.530 8 H 0.090 0.910 9 C 0.042 3.958 10 H 0.063 0.937 11 C -0.101 4.101 12 C -0.063 4.063 13 C -0.143 4.143 14 C -0.139 4.139 15 C -0.162 4.162 16 C -0.123 4.123 17 C -0.140 4.140 18 C 0.086 3.914 19 H 0.062 0.938 20 O -0.333 6.333 21 H 0.068 0.932 22 H 0.092 0.908 23 H 0.091 0.909 24 H 0.133 0.867 25 H 0.133 0.867 26 H 0.132 0.868 27 H 0.129 0.871 28 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.725 -9.366 -2.866 9.821 hybrid contribution 0.534 0.174 -0.157 0.583 sum 1.259 -9.192 -3.023 9.758 Atomic orbital electron populations 1.69976 1.05891 1.26386 1.51464 1.25004 0.94857 0.99172 0.95411 0.86494 0.80291 0.83649 0.77336 1.19691 1.21203 1.21238 1.21020 0.93759 0.89079 1.49176 0.91027 1.19517 0.90838 0.91657 0.93762 0.93744 1.21283 1.01904 0.86874 1.00001 1.21444 0.93186 0.98540 0.93083 1.20717 1.00056 0.93777 0.99780 1.20951 0.98053 0.94741 1.00153 1.20849 0.96818 0.99167 0.99376 1.20613 0.99479 0.93183 0.99056 1.21664 0.98317 0.93930 1.00087 1.21553 0.85488 0.93628 0.90724 0.93807 1.86877 1.29024 1.36250 1.81112 0.93181 0.90753 0.90931 0.86693 0.86706 0.86756 0.87087 0.80705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.86 12.33 55.43 0.68 -25.18 15 2 C 0.06 1.57 5.33 -17.82 -0.10 1.48 15 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 15 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 15 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 7 C -0.49 -13.79 8.05 -34.44 -0.28 -14.06 15 8 H 0.07 2.05 6.79 -52.49 -0.36 1.69 15 9 C 0.06 1.54 2.98 -90.23 -0.27 1.27 15 10 H 0.04 1.19 8.14 -51.93 -0.42 0.77 15 11 C -0.06 -1.53 5.38 -26.85 -0.14 -1.67 15 12 C -0.06 -1.30 6.14 -104.20 -0.64 -1.94 15 13 C -0.13 -2.24 10.04 -39.53 -0.40 -2.64 15 14 C -0.12 -1.86 10.05 -39.62 -0.40 -2.26 15 15 C -0.14 -2.15 10.05 -39.62 -0.40 -2.55 15 16 C -0.11 -1.73 10.04 -39.54 -0.40 -2.13 15 17 C -0.14 -2.76 5.80 -104.21 -0.60 -3.36 15 18 C 0.14 3.12 4.07 -26.72 -0.11 3.01 15 19 H 0.04 0.88 8.14 -51.93 -0.42 0.46 15 20 O -0.53 -11.31 11.67 -35.23 -0.41 -11.72 15 21 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 22 H 0.07 1.94 7.89 -51.93 -0.41 1.53 15 23 H 0.07 1.83 7.88 -51.93 -0.41 1.42 15 24 H 0.11 1.86 8.06 -52.49 -0.42 1.43 15 25 H 0.11 1.41 8.06 -52.49 -0.42 0.99 15 26 H 0.11 1.35 8.06 -52.49 -0.42 0.93 15 27 H 0.11 1.52 8.06 -52.48 -0.42 1.10 15 28 H 0.35 5.54 9.10 45.56 0.41 5.96 15 LS Contribution 241.26 15.07 3.64 3.64 Total: -1.00 -30.25 241.26 -7.27 -37.52 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -2.43 Total: 3.83 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: -3.73 Total: -24.85 kcal Atomic # 7 Polarization: -25.86 SS G_CDS: 0.68 Total: -25.18 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.41 Total: -11.72 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.25 -7.27 -37.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238717361.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.130 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds