Wall clock time and date at job start Thu Apr 9 2020 14:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 F 1.39898 * 109.47483 * 2 1 4 4 F 1.39899 * 109.47404 * 239.99509 * 2 1 3 5 5 C 1.53004 * 109.47122 * 120.00013 * 2 1 3 6 6 H 1.09003 * 109.47150 * 184.96004 * 5 2 1 7 7 C 1.50706 * 109.47036 * 304.95629 * 5 2 1 8 8 H 1.08003 * 119.99159 * 84.87982 * 7 5 2 9 9 C 1.37872 * 120.00175 * 264.88563 * 7 5 2 10 10 N 1.31517 * 119.99700 * 184.91821 * 9 7 5 11 11 Si 1.86796 * 120.00060 * 4.91430 * 9 7 5 12 12 H 1.48498 * 109.47236 * 84.76066 * 11 9 7 13 13 H 1.48502 * 109.46913 * 204.76064 * 11 9 7 14 14 H 1.48506 * 109.47290 * 324.75941 * 11 9 7 15 15 C 1.52994 * 109.47316 * 64.95823 * 5 2 1 16 16 C 1.53778 * 113.61524 * 179.97438 * 15 5 2 17 17 C 1.53781 * 87.08360 * 220.02097 * 16 15 5 18 18 C 1.53779 * 87.17181 * 25.39034 * 17 16 15 19 19 H 1.09005 * 109.47364 * 300.00222 * 1 2 3 20 20 H 1.09004 * 109.47169 * 60.00105 * 1 2 3 21 21 H 1.08998 * 109.47239 * 179.97438 * 1 2 3 22 22 H 0.97000 * 119.99504 * 179.97438 * 10 9 7 23 23 H 1.08998 * 112.85294 * 311.20042 * 15 5 2 24 24 H 1.09000 * 113.61470 * 105.47106 * 16 15 5 25 25 H 1.09004 * 113.61599 * 334.56824 * 16 15 5 26 26 H 1.09002 * 113.61846 * 139.98329 * 17 16 15 27 27 H 1.08996 * 113.61550 * 270.80316 * 17 16 15 28 28 H 1.09002 * 113.61192 * 89.15955 * 18 17 16 29 29 H 1.09001 * 113.61665 * 220.06490 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3189 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0399 -0.7213 1.2493 6 1 3.1263 -0.6450 1.2948 7 6 1.4398 -0.0852 2.4767 8 1 0.4637 -0.3928 2.8217 9 6 2.1369 0.8891 3.1590 10 7 1.6576 1.3751 4.2832 11 14 3.7620 1.5189 2.4869 12 1 3.5042 2.5923 1.4937 13 1 4.5814 2.0611 3.6004 14 1 4.4923 0.4038 1.8322 15 6 1.6343 -2.1952 1.1885 16 6 2.1018 -3.0134 2.4038 17 6 2.4248 -4.1477 1.4169 18 6 2.5812 -3.0623 0.3388 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 2.1482 2.0604 4.7634 23 1 0.5806 -2.3347 0.9471 24 1 1.3000 -3.2564 3.1011 25 1 2.9817 -2.5995 2.8965 26 1 3.3519 -4.6738 1.6446 27 1 1.5879 -4.8228 1.2386 28 1 3.5923 -2.6618 0.2659 29 1 2.1658 -3.3446 -0.6286 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257817374.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:29 Heat of formation + Delta-G solvation = -110.582602 kcal Electronic energy + Delta-G solvation = -14316.008104 eV Core-core repulsion = 11681.456684 eV Total energy + Delta-G solvation = -2634.551419 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.102 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.67658 -47.67374 -39.74329 -35.44492 -33.40979 -29.82508 -26.67905 -26.01576 -24.60371 -21.58402 -20.10895 -19.09569 -18.01514 -17.54174 -16.92375 -16.52334 -15.73768 -15.33508 -14.72342 -14.55125 -14.14079 -14.01662 -13.53970 -13.23576 -13.18066 -13.00524 -12.80992 -12.60081 -12.55845 -11.91281 -11.55811 -11.37166 -11.13767 -10.92423 -10.75136 -10.56498 -8.34289 -6.37539 1.28871 1.35929 1.40590 2.29942 2.89894 3.29784 3.65538 3.81864 3.89394 4.00948 4.06044 4.18007 4.34335 4.65366 4.79391 4.84731 4.94617 5.03345 5.10443 5.17834 5.19769 5.29136 5.33009 5.51760 5.61344 5.80708 6.23685 6.70081 7.29472 8.80098 Molecular weight = 204.10amu Principal moments of inertia in cm(-1) A = 0.028570 B = 0.017947 C = 0.014128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.797520 B = 1559.757867 C = 1981.376485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.263 3.737 3 F -0.223 7.223 4 F -0.217 7.217 5 C -0.018 4.018 6 H 0.043 0.957 7 C -0.491 4.491 8 H 0.058 0.942 9 C 0.035 3.965 10 N -0.932 5.932 11 Si 0.918 3.082 12 H -0.272 1.272 13 H -0.294 1.294 14 H -0.255 1.255 15 C -0.096 4.096 16 C -0.122 4.122 17 C -0.128 4.128 18 C -0.135 4.135 19 H 0.080 0.920 20 H 0.077 0.923 21 H 0.097 0.903 22 H 0.266 0.734 23 H 0.093 0.907 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.064 0.936 29 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.351 -7.642 -7.900 10.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.227 3.773 3 F -0.205 7.205 4 F -0.199 7.199 5 C -0.038 4.038 6 H 0.061 0.939 7 C -0.528 4.528 8 H 0.076 0.924 9 C -0.165 4.165 10 N -0.571 5.571 11 Si 0.746 3.254 12 H -0.198 1.198 13 H -0.221 1.221 14 H -0.180 1.180 15 C -0.114 4.114 16 C -0.160 4.160 17 C -0.166 4.166 18 C -0.173 4.173 19 H 0.099 0.901 20 H 0.096 0.904 21 H 0.116 0.884 22 H 0.075 0.925 23 H 0.111 0.889 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.113 0.887 28 H 0.083 0.917 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.404 -7.497 -7.780 10.812 hybrid contribution 0.847 1.052 0.028 1.351 sum 1.250 -6.445 -7.752 10.158 Atomic orbital electron populations 1.22529 0.90557 1.05445 1.04221 1.22284 0.95544 0.75005 0.84504 1.92824 1.90856 1.40069 1.96717 1.92886 1.91031 1.81104 1.54846 1.20266 0.97626 0.94772 0.91148 0.93899 1.20761 1.04364 1.19521 1.08187 0.92372 1.25645 1.00177 0.96226 0.94433 1.69983 1.41016 1.29637 1.16453 0.86271 0.81474 0.79920 0.77766 1.19771 1.22065 1.17978 1.22527 0.99595 0.91688 0.97594 1.22674 1.00519 0.96483 0.96292 1.22822 1.02305 0.95772 0.95652 1.22997 0.99121 0.97060 0.98082 0.90097 0.90432 0.88401 0.92453 0.88890 0.92208 0.92318 0.90835 0.88684 0.91740 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.10 8.86 71.98 0.64 -5.46 15 2 C 0.26 11.09 1.89 30.59 0.06 11.14 15 3 F -0.22 -10.63 14.18 44.97 0.64 -10.00 15 4 F -0.22 -8.54 15.78 44.97 0.71 -7.83 15 5 C -0.02 -0.82 1.28 -11.54 -0.01 -0.84 15 6 H 0.04 2.05 4.94 -2.39 -0.01 2.04 15 7 C -0.49 -25.79 6.74 25.60 0.17 -25.62 15 8 H 0.06 3.28 7.99 -2.91 -0.02 3.26 15 9 C 0.03 1.97 5.47 84.65 0.46 2.43 15 10 N -0.93 -55.99 13.96 21.45 0.30 -55.69 15 11 Si 0.92 45.64 25.40 68.60 1.74 47.38 15 12 H -0.27 -13.68 6.80 99.48 0.68 -13.00 15 13 H -0.29 -14.35 7.11 99.48 0.71 -13.64 15 14 H -0.26 -12.06 6.06 99.48 0.60 -11.46 15 15 C -0.10 -3.49 2.82 -10.21 -0.03 -3.52 15 16 C -0.12 -4.28 7.10 31.12 0.22 -4.06 15 17 C -0.13 -3.46 8.08 31.12 0.25 -3.21 15 18 C -0.14 -4.18 6.64 31.18 0.21 -3.97 15 19 H 0.08 3.24 7.03 -2.38 -0.02 3.23 15 20 H 0.08 2.40 8.14 -2.39 -0.02 2.38 15 21 H 0.10 3.02 6.43 -2.39 -0.02 3.00 15 22 H 0.27 15.22 8.31 -92.71 -0.77 14.45 15 23 H 0.09 3.16 6.38 -2.39 -0.02 3.14 15 24 H 0.06 2.07 8.14 -2.39 -0.02 2.05 15 25 H 0.06 2.28 8.10 -2.38 -0.02 2.26 15 26 H 0.07 1.78 8.14 -2.39 -0.02 1.76 15 27 H 0.09 2.16 8.14 -2.39 -0.02 2.15 15 28 H 0.06 2.12 7.97 -2.39 -0.02 2.10 15 29 H 0.08 2.09 8.14 -2.39 -0.02 2.07 15 Total: -1.00 -59.81 236.03 6.35 -53.45 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: 1.00 Total: 5.79 kcal Atomic # 6 Polarization: -35.07 SS G_CDS: 1.97 Total: -33.11 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.30 Total: -55.69 kcal Atomic # 9 Polarization: -19.17 SS G_CDS: 1.35 Total: -17.82 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.74 Total: 47.38 kcal Total: -59.81 6.35 -53.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257817374.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.129 kcal (2) G-P(sol) polarization free energy of solvation -59.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds