Wall clock time and date at job start Thu Apr 9 2020 14:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37657 * 126.54178 * 2 1 4 4 C 1.40400 * 125.29221 * 359.97438 * 3 2 1 5 5 H 1.07995 * 119.99939 * 0.02562 * 4 3 2 6 6 C 1.40429 * 119.99893 * 180.02562 * 4 3 2 7 7 N 1.30526 * 119.99785 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99828 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47135 * 90.00560 * 8 6 4 10 10 H 1.48497 * 109.47087 * 210.00446 * 8 6 4 11 11 H 1.48504 * 109.47187 * 330.00570 * 8 6 4 12 12 N 1.32582 * 109.41563 * 180.02562 * 3 2 1 13 13 C 1.33631 * 109.78457 * 0.02562 * 12 3 2 14 14 N 1.33825 * 134.14905 * 180.02562 * 13 12 3 15 15 C 1.31344 * 120.38904 * 179.97438 * 14 13 12 16 16 N 1.32236 * 122.57780 * 359.97438 * 15 14 13 17 17 C 1.32309 * 121.34369 * 0.03094 * 16 15 14 18 18 C 1.37544 * 126.54010 * 180.02562 * 2 1 3 19 19 H 1.08995 * 109.47658 * 89.96889 * 1 2 3 20 20 H 1.09004 * 109.47448 * 209.97947 * 1 2 3 21 21 H 1.09004 * 109.47104 * 329.97159 * 1 2 3 22 22 H 0.97005 * 119.99317 * 179.97438 * 7 6 4 23 23 H 1.08009 * 118.71418 * 179.72406 * 15 14 13 24 24 H 1.08003 * 120.66503 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2846 1.1060 0.0000 4 6 1.8468 2.4400 -0.0005 5 1 0.7898 2.6614 -0.0005 6 6 2.7835 3.4863 -0.0010 7 7 4.0610 3.2185 -0.0015 8 14 2.2011 5.2611 -0.0024 9 1 2.0465 5.7325 1.3973 10 1 3.1989 6.1090 -0.7029 11 1 0.8948 5.3529 -0.7027 12 7 3.5516 0.7155 -0.0006 13 6 3.6136 -0.6193 -0.0015 14 7 4.6160 -1.5059 -0.0019 15 6 4.3631 -2.7948 -0.0024 16 7 3.1325 -3.2789 -0.0020 17 6 2.0784 -2.4793 -0.0017 18 6 2.2839 -1.1051 -0.0005 19 1 -0.3634 0.0006 -1.0276 20 1 -0.3634 -0.8902 0.5135 21 1 -0.3633 0.8898 0.5143 22 1 4.7079 3.9413 -0.0022 23 1 5.1927 -3.4864 -0.0073 24 1 1.0781 -2.8866 -0.0017 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259802604.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:59 Heat of formation + Delta-G solvation = 89.313694 kcal Electronic energy + Delta-G solvation = -12595.384913 eV Core-core repulsion = 10316.650491 eV Total energy + Delta-G solvation = -2278.734423 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 204.071 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.89736 -37.84534 -33.91805 -33.27162 -31.29087 -29.64153 -26.86881 -26.13106 -22.54051 -22.14674 -19.97536 -17.50327 -17.03419 -16.13473 -15.34727 -15.05272 -14.90113 -13.60776 -13.19540 -13.03172 -12.61304 -12.19133 -11.79562 -11.68725 -11.28516 -10.99280 -10.56565 -10.25659 -10.09889 -9.61661 -8.75063 -7.83146 -7.64191 -7.61392 -6.89001 -5.00517 1.95675 2.37092 2.88816 2.91221 2.96326 3.61566 3.87748 3.94687 4.85272 5.03264 5.18095 5.36299 5.43413 5.63817 5.78712 5.82373 5.94459 6.23054 6.71006 6.98863 7.19025 7.38659 7.44126 7.86174 8.28770 8.35013 8.68435 9.27746 9.70329 9.97672 Molecular weight = 204.07amu Principal moments of inertia in cm(-1) A = 0.055226 B = 0.010692 C = 0.009002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.889648 B = 2618.054670 C = 3109.800567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.536 5.536 3 C 0.429 3.571 4 C -0.421 4.421 5 H 0.096 0.904 6 C 0.072 3.928 7 N -0.699 5.699 8 Si 0.925 3.075 9 H -0.265 1.265 10 H -0.271 1.271 11 H -0.259 1.259 12 N -0.518 5.518 13 C 0.325 3.675 14 N -0.528 5.528 15 C 0.273 3.727 16 N -0.566 5.566 17 C 0.137 3.863 18 C -0.096 4.096 19 H 0.054 0.946 20 H 0.063 0.937 21 H 0.079 0.921 22 H 0.286 0.714 23 H 0.179 0.821 24 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.447 -0.203 0.079 6.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.233 5.233 3 C 0.193 3.807 4 C -0.459 4.459 5 H 0.114 0.886 6 C -0.159 4.159 7 N -0.319 5.319 8 Si 0.748 3.252 9 H -0.190 1.190 10 H -0.196 1.196 11 H -0.183 1.183 12 N -0.246 5.246 13 C 0.067 3.933 14 N -0.249 5.249 15 C -0.020 4.020 16 N -0.286 5.286 17 C -0.029 4.029 18 C -0.212 4.212 19 H 0.073 0.927 20 H 0.082 0.918 21 H 0.097 0.903 22 H 0.097 0.903 23 H 0.195 0.805 24 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.886 -0.182 0.075 4.890 hybrid contribution -1.699 0.720 -0.006 1.846 sum -6.586 0.538 0.068 6.608 Atomic orbital electron populations 1.21511 0.78414 1.02720 1.01510 1.45136 1.05429 1.04916 1.67837 1.20666 0.82699 0.87856 0.89436 1.18740 0.95201 0.86308 1.45700 0.88599 1.26010 0.94378 1.01950 0.93514 1.69943 1.01723 1.35182 1.25100 0.86027 0.79816 0.79785 0.79566 1.18989 1.19608 1.18269 1.71253 1.15858 1.04305 1.33188 1.20354 0.85932 0.92763 0.94227 1.67677 1.35004 1.02006 1.20253 1.24186 0.92996 0.89400 0.95396 1.68230 0.99598 1.38888 1.21877 1.21560 0.97625 0.86053 0.97703 1.20623 0.96111 0.91214 1.13250 0.92744 0.91789 0.90271 0.90253 0.80458 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.68 10.94 59.84 0.65 2.33 14 2 N -0.54 -12.28 3.24 -120.79 -0.39 -12.67 14 3 C 0.43 11.27 7.41 -155.68 -1.15 10.12 14 4 C -0.42 -10.16 9.00 -37.94 -0.34 -10.50 14 5 H 0.10 2.02 7.10 -52.49 -0.37 1.65 14 6 C 0.07 1.68 5.50 -17.28 -0.10 1.58 14 7 N -0.70 -17.97 11.86 55.57 0.66 -17.31 14 8 Si 0.93 16.77 29.56 -169.99 -5.03 11.74 14 9 H -0.27 -4.74 7.11 56.52 0.40 -4.33 14 10 H -0.27 -4.87 7.11 56.52 0.40 -4.47 14 11 H -0.26 -4.51 7.11 56.52 0.40 -4.11 14 12 N -0.52 -15.09 9.33 -11.89 -0.11 -15.20 14 13 C 0.33 8.96 8.40 -157.83 -1.33 7.64 14 14 N -0.53 -13.67 10.51 -14.27 -0.15 -13.82 14 15 C 0.27 5.97 12.24 -92.16 -1.13 4.85 14 16 N -0.57 -12.18 10.42 -14.50 -0.15 -12.33 14 17 C 0.14 2.91 11.35 -17.08 -0.19 2.72 14 18 C -0.10 -2.33 6.93 -83.77 -0.58 -2.91 14 19 H 0.05 0.81 8.14 -51.93 -0.42 0.39 14 20 H 0.06 0.89 8.14 -51.93 -0.42 0.47 14 21 H 0.08 1.19 7.32 -51.93 -0.38 0.81 14 22 H 0.29 6.57 8.29 -40.82 -0.34 6.23 14 23 H 0.18 3.10 8.06 -52.48 -0.42 2.67 14 24 H 0.14 2.39 8.06 -52.48 -0.42 1.96 14 LS Contribution 223.12 15.07 3.36 3.36 Total: -1.00 -31.57 223.12 -7.55 -39.12 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -1.58 Total: 1.28 kcal Atomic # 6 Polarization: 19.99 SS G_CDS: -4.16 Total: 15.83 kcal Atomic # 7 Polarization: -71.19 SS G_CDS: -0.14 Total: -71.33 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -5.03 Total: 11.74 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -31.57 -7.55 -39.12 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259802604.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.433 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds