Wall clock time and date at job start Thu Apr 9 2020 14:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37657 * 126.54178 * 2 1 4 4 C 1.40400 * 125.29221 * 359.97438 * 3 2 1 5 5 H 1.07995 * 119.99939 * 0.02562 * 4 3 2 6 6 C 1.40429 * 119.99893 * 180.02562 * 4 3 2 7 7 N 1.30526 * 119.99785 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99828 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47135 * 90.00560 * 8 6 4 10 10 H 1.48497 * 109.47087 * 210.00446 * 8 6 4 11 11 H 1.48504 * 109.47187 * 330.00570 * 8 6 4 12 12 N 1.32582 * 109.41563 * 180.02562 * 3 2 1 13 13 C 1.33631 * 109.78457 * 0.02562 * 12 3 2 14 14 N 1.33825 * 134.14905 * 180.02562 * 13 12 3 15 15 C 1.31344 * 120.38904 * 179.97438 * 14 13 12 16 16 N 1.32236 * 122.57780 * 359.97438 * 15 14 13 17 17 C 1.32309 * 121.34369 * 0.03094 * 16 15 14 18 18 C 1.37544 * 126.54010 * 180.02562 * 2 1 3 19 19 H 1.08995 * 109.47658 * 89.96889 * 1 2 3 20 20 H 1.09004 * 109.47448 * 209.97947 * 1 2 3 21 21 H 1.09004 * 109.47104 * 329.97159 * 1 2 3 22 22 H 0.97005 * 119.99317 * 179.97438 * 7 6 4 23 23 H 1.08009 * 118.71418 * 179.72406 * 15 14 13 24 24 H 1.08003 * 120.66503 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2846 1.1060 0.0000 4 6 1.8468 2.4400 -0.0005 5 1 0.7898 2.6614 -0.0005 6 6 2.7835 3.4863 -0.0010 7 7 4.0610 3.2185 -0.0015 8 14 2.2011 5.2611 -0.0024 9 1 2.0465 5.7325 1.3973 10 1 3.1989 6.1090 -0.7029 11 1 0.8948 5.3529 -0.7027 12 7 3.5516 0.7155 -0.0006 13 6 3.6136 -0.6193 -0.0015 14 7 4.6160 -1.5059 -0.0019 15 6 4.3631 -2.7948 -0.0024 16 7 3.1325 -3.2789 -0.0020 17 6 2.0784 -2.4793 -0.0017 18 6 2.2839 -1.1051 -0.0005 19 1 -0.3634 0.0006 -1.0276 20 1 -0.3634 -0.8902 0.5135 21 1 -0.3633 0.8898 0.5143 22 1 4.7079 3.9413 -0.0022 23 1 5.1927 -3.4864 -0.0073 24 1 1.0781 -2.8866 -0.0017 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259802604.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:59 Heat of formation + Delta-G solvation = 68.989843 kcal Electronic energy + Delta-G solvation = -12596.266221 eV Core-core repulsion = 10316.650491 eV Total energy + Delta-G solvation = -2279.615731 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 204.071 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.68789 -39.60954 -35.66999 -35.02940 -33.03950 -31.44143 -28.65935 -27.64616 -24.31526 -23.93513 -21.75394 -19.27315 -18.78984 -17.88294 -17.00251 -16.69980 -16.62454 -15.20148 -14.78440 -14.76379 -14.24595 -13.58904 -13.41745 -13.25977 -12.79617 -12.67026 -12.11117 -11.93289 -11.84565 -11.28184 -10.61680 -9.69914 -9.48813 -9.39210 -8.62985 -6.84978 0.17274 0.58997 1.43044 1.45840 1.61434 2.07586 2.19758 2.29442 3.09623 3.29366 3.49567 3.57844 3.85525 4.10767 4.18695 4.55574 4.61168 4.72137 4.99157 5.23007 5.48059 5.67505 5.73429 6.07308 6.49469 6.56455 6.93000 7.46504 7.86182 8.27872 Molecular weight = 204.07amu Principal moments of inertia in cm(-1) A = 0.055226 B = 0.010692 C = 0.009002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.889648 B = 2618.054670 C = 3109.800567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.534 5.534 3 C 0.400 3.600 4 C -0.438 4.438 5 H 0.123 0.877 6 C 0.026 3.974 7 N -0.755 5.755 8 Si 1.011 2.989 9 H -0.259 1.259 10 H -0.272 1.272 11 H -0.241 1.241 12 N -0.572 5.572 13 C 0.277 3.723 14 N -0.562 5.562 15 C 0.272 3.728 16 N -0.560 5.560 17 C 0.155 3.845 18 C -0.112 4.112 19 H 0.072 0.928 20 H 0.093 0.907 21 H 0.091 0.909 22 H 0.290 0.710 23 H 0.218 0.782 24 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.732 -0.392 0.076 8.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.230 5.230 3 C 0.163 3.837 4 C -0.477 4.477 5 H 0.141 0.859 6 C -0.199 4.199 7 N -0.377 5.377 8 Si 0.828 3.172 9 H -0.183 1.183 10 H -0.197 1.197 11 H -0.163 1.163 12 N -0.301 5.301 13 C 0.020 3.980 14 N -0.285 5.285 15 C -0.020 4.020 16 N -0.279 5.279 17 C -0.013 4.013 18 C -0.229 4.229 19 H 0.090 0.910 20 H 0.111 0.889 21 H 0.110 0.890 22 H 0.101 0.899 23 H 0.234 0.766 24 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -7.209 -0.407 0.072 7.220 hybrid contribution -0.984 0.605 -0.005 1.155 sum -8.192 0.198 0.067 8.195 Atomic orbital electron populations 1.21921 0.74759 1.04856 1.03306 1.45342 1.07421 1.03471 1.66750 1.21071 0.82870 0.89415 0.90334 1.19344 0.96778 0.85982 1.45567 0.85888 1.27239 0.93992 1.06894 0.91817 1.70095 1.03620 1.37053 1.26974 0.84783 0.79711 0.72864 0.79807 1.18324 1.19684 1.16343 1.71095 1.18432 1.05852 1.34757 1.20708 0.88200 0.92945 0.96165 1.67670 1.35845 1.03362 1.21575 1.24987 0.94494 0.88767 0.93720 1.68381 0.99662 1.38534 1.21339 1.22284 0.99456 0.84770 0.94802 1.20832 0.95076 0.92639 1.14303 0.90977 0.88852 0.89032 0.89896 0.76573 0.79746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.78 10.94 127.77 1.40 4.18 14 2 N -0.53 -24.01 3.24 -536.07 -1.74 -25.74 14 3 C 0.40 21.37 7.41 133.77 0.99 22.36 14 4 C -0.44 -21.16 9.00 23.33 0.21 -20.95 14 5 H 0.12 4.99 7.10 -2.91 -0.02 4.97 14 6 C 0.03 1.20 5.50 85.42 0.47 1.67 14 7 N -0.76 -40.36 11.86 21.91 0.26 -40.10 14 8 Si 1.01 33.77 29.56 68.60 2.03 35.80 14 9 H -0.26 -8.32 7.11 99.48 0.71 -7.62 14 10 H -0.27 -9.01 7.11 99.48 0.71 -8.30 14 11 H -0.24 -7.26 7.11 99.48 0.71 -6.55 14 12 N -0.57 -34.67 9.33 -191.52 -1.79 -36.45 14 13 C 0.28 15.63 8.40 134.98 1.13 16.76 14 14 N -0.56 -29.61 10.51 -199.07 -2.09 -31.70 14 15 C 0.27 11.61 12.24 180.89 2.21 13.82 14 16 N -0.56 -22.77 10.42 -199.78 -2.08 -24.85 14 17 C 0.16 6.16 11.35 84.79 0.96 7.12 14 18 C -0.11 -5.37 6.93 39.24 0.27 -5.10 14 19 H 0.07 1.92 8.14 -2.39 -0.02 1.90 14 20 H 0.09 2.23 8.14 -2.39 -0.02 2.21 14 21 H 0.09 2.50 7.32 -2.38 -0.02 2.49 14 22 H 0.29 13.92 8.29 -92.70 -0.77 13.16 14 23 H 0.22 7.11 8.06 -2.91 -0.02 7.09 14 24 H 0.19 5.49 8.06 -2.91 -0.02 5.47 14 Total: -1.00 -71.83 223.12 3.47 -68.35 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 1.23 Total: 14.81 kcal Atomic # 6 Polarization: 32.23 SS G_CDS: 7.65 Total: 39.88 kcal Atomic # 7 Polarization: -151.41 SS G_CDS: -7.44 Total: -158.85 kcal Atomic # 14 Polarization: 33.77 SS G_CDS: 2.03 Total: 35.80 kcal Total: -71.83 3.47 -68.35 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259802604.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.345 kcal (2) G-P(sol) polarization free energy of solvation -71.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds