Wall clock time and date at job start Thu Apr 9 2020 14:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36706 * 120.78325 * 2 1 4 4 N 1.33380 * 120.45997 * 179.97438 * 3 2 1 5 5 C 1.30740 * 121.90941 * 0.02562 * 4 3 2 6 6 N 1.35462 * 120.98314 * 0.02658 * 5 4 3 7 7 C 1.37865 * 134.46856 * 179.97438 * 6 5 4 8 8 C 1.39618 * 126.53280 * 0.03587 * 7 6 5 9 9 H 1.07998 * 120.00028 * 359.97438 * 8 7 6 10 10 C 1.40060 * 120.00122 * 179.97438 * 8 7 6 11 11 N 1.30855 * 120.00030 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00066 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46764 * 90.00034 * 12 10 8 14 14 H 1.48505 * 109.47239 * 209.99989 * 12 10 8 15 15 H 1.48500 * 109.47056 * 330.00159 * 12 10 8 16 16 N 1.33534 * 106.93956 * 179.97438 * 7 6 5 17 17 N 1.28707 * 109.98979 * 0.02562 * 16 7 6 18 18 C 1.32843 * 109.97760 * 359.97438 * 17 16 7 19 19 H 1.08997 * 109.47316 * 269.97407 * 1 2 3 20 20 H 1.08993 * 109.46985 * 29.98107 * 1 2 3 21 21 H 1.09002 * 109.46654 * 149.98142 * 1 2 3 22 22 H 1.08007 * 119.76817 * 0.02562 * 3 2 1 23 23 H 1.08002 * 119.50465 * 179.97438 * 5 4 3 24 24 H 0.97001 * 119.99441 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2067 1.1745 0.0000 4 7 3.5404 1.1669 0.0005 5 6 4.2252 0.0532 0.0005 6 7 3.6012 -1.1491 -0.0005 7 6 4.0295 -2.4595 -0.0012 8 6 5.3541 -2.9010 -0.0003 9 1 6.1621 -2.1844 0.0007 10 6 5.6350 -4.2731 -0.0007 11 7 4.6560 -5.1414 -0.0024 12 14 7.4072 -4.8637 -0.0002 13 1 7.8761 -5.0207 1.4001 14 1 7.4937 -6.1703 -0.7006 15 1 8.2604 -3.8697 -0.6995 16 7 2.9362 -3.2262 -0.0016 17 7 1.8815 -2.4885 -0.0017 18 6 2.2252 -1.2053 -0.0008 19 1 -0.3634 -0.0005 1.0276 20 1 -0.3633 0.8901 -0.5135 21 1 -0.3633 -0.8899 -0.5141 22 1 1.6756 2.1150 0.0004 23 1 5.3045 0.0924 0.0005 24 1 4.8506 -6.0917 -0.0022 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259867801.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:10 Heat of formation + Delta-G solvation = 98.211673 kcal Electronic energy + Delta-G solvation = -12591.434556 eV Core-core repulsion = 10313.085979 eV Total energy + Delta-G solvation = -2278.348577 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 204.071 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.74118 -37.77630 -34.16995 -33.46222 -31.72989 -29.30045 -26.79930 -25.84615 -22.86867 -22.36912 -20.72046 -17.88296 -16.95900 -16.40276 -15.37295 -15.21250 -14.56951 -13.56215 -13.36237 -12.88909 -12.18615 -12.12354 -11.87484 -11.45521 -11.40611 -11.22951 -10.51318 -10.18855 -10.11441 -9.61829 -9.30097 -8.80256 -8.53871 -7.29386 -6.87867 -4.72653 1.43565 2.34831 2.95303 2.96187 3.00933 3.58549 3.85296 4.05028 4.47646 4.86924 5.09463 5.21323 5.45231 5.66953 5.74849 6.01952 6.25820 6.30052 6.52174 6.75448 6.90536 6.98106 7.30799 7.74140 7.91286 8.30985 8.45629 8.70066 10.03976 10.30650 Molecular weight = 204.07amu Principal moments of inertia in cm(-1) A = 0.058435 B = 0.010429 C = 0.008892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.049268 B = 2684.114948 C = 3148.020608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.066 4.066 3 C 0.014 3.986 4 N -0.524 5.524 5 C 0.344 3.656 6 N -0.473 5.473 7 C 0.325 3.675 8 C -0.430 4.430 9 H 0.092 0.908 10 C 0.073 3.927 11 N -0.728 5.728 12 Si 0.928 3.072 13 H -0.266 1.266 14 H -0.273 1.273 15 H -0.260 1.260 16 N -0.305 5.305 17 N -0.272 5.272 18 C 0.084 3.916 19 H 0.068 0.932 20 H 0.064 0.936 21 H 0.072 0.928 22 H 0.151 0.849 23 H 0.190 0.810 24 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.960 5.886 0.007 5.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.073 4.073 3 C -0.124 4.124 4 N -0.240 5.240 5 C 0.058 3.942 6 N -0.168 5.168 7 C 0.086 3.914 8 C -0.470 4.470 9 H 0.110 0.890 10 C -0.154 4.154 11 N -0.351 5.351 12 Si 0.751 3.249 13 H -0.191 1.191 14 H -0.197 1.197 15 H -0.183 1.183 16 N -0.151 5.151 17 N -0.118 5.118 18 C -0.165 4.165 19 H 0.087 0.913 20 H 0.082 0.918 21 H 0.091 0.909 22 H 0.168 0.832 23 H 0.207 0.793 24 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.169 5.076 -0.001 5.079 hybrid contribution 1.212 0.128 0.020 1.219 sum 1.382 5.204 0.019 5.385 Atomic orbital electron populations 1.20486 0.90028 1.02575 1.02091 1.19573 0.96780 0.89545 1.01352 1.21747 0.89168 0.96767 1.04755 1.68028 1.09408 1.25671 1.20883 1.24302 0.99171 0.78846 0.91840 1.44999 1.08879 1.07785 1.55156 1.21711 0.97114 0.75053 0.97509 1.18239 0.88275 0.93146 1.47329 0.89036 1.25878 1.00177 0.95989 0.93345 1.70002 1.33296 1.03342 1.28411 0.85983 0.80495 0.78956 0.79453 1.19102 1.19745 1.18335 1.75777 0.92225 1.20543 1.26545 1.74597 1.24258 0.97140 1.15768 1.21387 0.81680 0.95905 1.17518 0.91341 0.91752 0.90888 0.83186 0.79321 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.49 10.06 36.01 0.36 -1.13 14 2 C -0.07 -1.33 5.91 -104.40 -0.62 -1.95 14 3 C 0.01 0.26 10.87 -17.43 -0.19 0.07 14 4 N -0.52 -10.21 10.37 -14.20 -0.15 -10.36 14 5 C 0.34 7.00 12.15 -89.79 -1.09 5.91 14 6 N -0.47 -11.59 2.99 -63.32 -0.19 -11.77 14 7 C 0.32 8.84 7.60 -154.96 -1.18 7.66 14 8 C -0.43 -10.80 9.30 -38.38 -0.36 -11.16 14 9 H 0.09 2.02 7.85 -52.49 -0.41 1.61 14 10 C 0.07 1.76 5.50 -17.28 -0.10 1.67 14 11 N -0.73 -19.04 11.93 55.56 0.66 -18.38 14 12 Si 0.93 17.43 29.56 -169.99 -5.03 12.41 14 13 H -0.27 -4.92 7.11 56.52 0.40 -4.52 14 14 H -0.27 -5.04 7.11 56.52 0.40 -4.64 14 15 H -0.26 -4.70 7.11 56.52 0.40 -4.30 14 16 N -0.30 -9.00 10.48 31.21 0.33 -8.67 14 17 N -0.27 -7.56 12.30 31.20 0.38 -7.18 14 18 C 0.08 2.09 7.68 -155.44 -1.19 0.90 14 19 H 0.07 1.00 8.14 -51.93 -0.42 0.58 14 20 H 0.06 0.81 8.10 -51.93 -0.42 0.39 14 21 H 0.07 1.24 8.11 -51.93 -0.42 0.82 14 22 H 0.15 2.21 8.06 -52.48 -0.42 1.78 14 23 H 0.19 3.13 8.06 -52.49 -0.42 2.71 14 24 H 0.28 6.66 8.30 -40.82 -0.34 6.32 14 LS Contribution 224.62 15.07 3.38 3.38 Total: -1.00 -31.24 224.62 -6.62 -37.85 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -1.66 Total: 0.75 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -4.36 Total: 1.96 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 1.04 Total: -56.36 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.41 kcal Total LS contribution 3.38 Total: 3.38 kcal Total: -31.24 -6.62 -37.85 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259867801.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.066 kcal (2) G-P(sol) polarization free energy of solvation -31.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds