Wall clock time and date at job start Thu Apr 9 2020 14:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36706 * 120.78325 * 2 1 4 4 N 1.33380 * 120.45997 * 179.97438 * 3 2 1 5 5 C 1.30740 * 121.90941 * 0.02562 * 4 3 2 6 6 N 1.35462 * 120.98314 * 0.02658 * 5 4 3 7 7 C 1.37865 * 134.46856 * 179.97438 * 6 5 4 8 8 C 1.39618 * 126.53280 * 0.03587 * 7 6 5 9 9 H 1.07998 * 120.00028 * 359.97438 * 8 7 6 10 10 C 1.40060 * 120.00122 * 179.97438 * 8 7 6 11 11 N 1.30855 * 120.00030 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00066 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46764 * 90.00034 * 12 10 8 14 14 H 1.48505 * 109.47239 * 209.99989 * 12 10 8 15 15 H 1.48500 * 109.47056 * 330.00159 * 12 10 8 16 16 N 1.33534 * 106.93956 * 179.97438 * 7 6 5 17 17 N 1.28707 * 109.98979 * 0.02562 * 16 7 6 18 18 C 1.32843 * 109.97760 * 359.97438 * 17 16 7 19 19 H 1.08997 * 109.47316 * 269.97407 * 1 2 3 20 20 H 1.08993 * 109.46985 * 29.98107 * 1 2 3 21 21 H 1.09002 * 109.46654 * 149.98142 * 1 2 3 22 22 H 1.08007 * 119.76817 * 0.02562 * 3 2 1 23 23 H 1.08002 * 119.50465 * 179.97438 * 5 4 3 24 24 H 0.97001 * 119.99441 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2067 1.1745 0.0000 4 7 3.5404 1.1669 0.0005 5 6 4.2252 0.0532 0.0005 6 7 3.6012 -1.1491 -0.0005 7 6 4.0295 -2.4595 -0.0012 8 6 5.3541 -2.9010 -0.0003 9 1 6.1621 -2.1844 0.0007 10 6 5.6350 -4.2731 -0.0007 11 7 4.6560 -5.1414 -0.0024 12 14 7.4072 -4.8637 -0.0002 13 1 7.8761 -5.0207 1.4001 14 1 7.4937 -6.1703 -0.7006 15 1 8.2604 -3.8697 -0.6995 16 7 2.9362 -3.2262 -0.0016 17 7 1.8815 -2.4885 -0.0017 18 6 2.2252 -1.2053 -0.0008 19 1 -0.3634 -0.0005 1.0276 20 1 -0.3633 0.8901 -0.5135 21 1 -0.3633 -0.8899 -0.5141 22 1 1.6756 2.1150 0.0004 23 1 5.3045 0.0924 0.0005 24 1 4.8506 -6.0917 -0.0022 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259867801.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:10 Heat of formation + Delta-G solvation = 79.239683 kcal Electronic energy + Delta-G solvation = -12592.257243 eV Core-core repulsion = 10313.085979 eV Total energy + Delta-G solvation = -2279.171264 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 204.071 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.57888 -39.48428 -35.94947 -35.15315 -33.43740 -31.15723 -28.27359 -27.71133 -24.56543 -24.14673 -22.52673 -19.62435 -18.77380 -18.07992 -17.08179 -17.04409 -16.19447 -15.16903 -14.88307 -14.30318 -13.76403 -13.68777 -13.32679 -13.14446 -12.95801 -12.84438 -12.06689 -11.97896 -11.82505 -11.34446 -10.96164 -10.73236 -10.38461 -9.06022 -8.66370 -6.64326 -0.17806 0.59472 1.42587 1.48599 1.60826 1.87904 2.23475 2.25677 2.73428 3.21230 3.36244 3.64058 3.89011 4.16042 4.33196 4.64551 4.78547 4.82142 4.98923 5.11963 5.21274 5.38174 5.57699 5.96799 6.07124 6.52199 6.60452 7.00085 8.27797 8.39987 Molecular weight = 204.07amu Principal moments of inertia in cm(-1) A = 0.058435 B = 0.010429 C = 0.008892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.049268 B = 2684.114948 C = 3148.020608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.100 4.100 3 C 0.042 3.958 4 N -0.518 5.518 5 C 0.336 3.664 6 N -0.480 5.480 7 C 0.298 3.702 8 C -0.451 4.451 9 H 0.118 0.882 10 C 0.025 3.975 11 N -0.779 5.779 12 Si 1.014 2.986 13 H -0.259 1.259 14 H -0.271 1.271 15 H -0.243 1.243 16 N -0.363 5.363 17 N -0.327 5.327 18 C 0.092 3.908 19 H 0.080 0.920 20 H 0.105 0.895 21 H 0.052 0.948 22 H 0.201 0.799 23 H 0.225 0.775 24 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.254 8.306 -0.003 8.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.097 4.097 4 N -0.234 5.234 5 C 0.052 3.948 6 N -0.175 5.175 7 C 0.058 3.942 8 C -0.491 4.491 9 H 0.136 0.864 10 C -0.197 4.197 11 N -0.404 5.404 12 Si 0.832 3.168 13 H -0.184 1.184 14 H -0.195 1.195 15 H -0.165 1.165 16 N -0.207 5.207 17 N -0.170 5.170 18 C -0.161 4.161 19 H 0.098 0.902 20 H 0.124 0.876 21 H 0.071 0.929 22 H 0.217 0.783 23 H 0.241 0.759 24 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.440 7.506 -0.012 7.643 hybrid contribution 0.735 -0.365 0.026 0.821 sum 2.175 7.142 0.015 7.466 Atomic orbital electron populations 1.20525 0.87134 1.03592 1.03140 1.20119 0.99041 0.88188 1.03257 1.22576 0.88827 0.98002 1.00267 1.68200 1.10075 1.24751 1.20351 1.25173 1.00890 0.77705 0.91038 1.45251 1.09019 1.08305 1.54879 1.22149 0.97587 0.75999 0.98448 1.18851 0.88204 0.94508 1.47515 0.86440 1.27119 1.05180 0.95586 0.91788 1.70146 1.36386 1.04013 1.29818 0.84732 0.73882 0.78469 0.79737 1.18387 1.19547 1.16544 1.75623 0.93339 1.22329 1.29453 1.74456 1.24508 0.98621 1.19414 1.22257 0.82616 0.96594 1.14615 0.90176 0.87614 0.92939 0.78260 0.75923 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.55 10.06 71.24 0.72 -1.83 14 2 C -0.10 -3.84 5.91 -19.72 -0.12 -3.96 14 3 C 0.04 1.38 10.87 84.10 0.91 2.30 14 4 N -0.52 -18.37 10.37 -198.83 -2.06 -20.43 14 5 C 0.34 12.96 12.15 180.06 2.19 15.14 14 6 N -0.48 -23.52 2.99 -354.25 -1.06 -24.58 14 7 C 0.30 16.71 7.60 133.22 1.01 17.72 14 8 C -0.45 -22.83 9.30 23.05 0.21 -22.62 14 9 H 0.12 5.05 7.85 -2.91 -0.02 5.03 14 10 C 0.03 1.23 5.50 85.28 0.47 1.70 14 11 N -0.78 -42.42 11.93 21.85 0.26 -42.16 14 12 Si 1.01 35.21 29.56 68.60 2.03 37.24 14 13 H -0.26 -8.66 7.11 99.48 0.71 -7.95 14 14 H -0.27 -9.21 7.11 99.48 0.71 -8.50 14 15 H -0.24 -7.68 7.11 99.48 0.71 -6.97 14 16 N -0.36 -22.56 10.48 -55.19 -0.58 -23.14 14 17 N -0.33 -19.03 12.30 -55.21 -0.68 -19.71 14 18 C 0.09 4.61 7.68 133.65 1.03 5.64 14 19 H 0.08 2.16 8.14 -2.39 -0.02 2.14 14 20 H 0.11 2.21 8.10 -2.39 -0.02 2.19 14 21 H 0.05 1.76 8.11 -2.39 -0.02 1.74 14 22 H 0.20 4.58 8.06 -2.91 -0.02 4.55 14 23 H 0.22 6.76 8.06 -2.91 -0.02 6.73 14 24 H 0.29 14.14 8.30 -92.71 -0.77 13.37 14 Total: -1.00 -71.90 224.62 5.56 -66.34 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 1.22 Total: 12.34 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 6.42 Total: 14.09 kcal Atomic # 7 Polarization: -125.90 SS G_CDS: -4.12 Total: -130.02 kcal Atomic # 14 Polarization: 35.21 SS G_CDS: 2.03 Total: 37.24 kcal Total: -71.90 5.56 -66.34 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259867801.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.582 kcal (2) G-P(sol) polarization free energy of solvation -71.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds