Wall clock time and date at job start Thu Apr 9 2020 14:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.31797 * 119.11985 * 269.72343 * 10 9 7 12 12 C 1.32337 * 120.81906 * 179.76089 * 11 10 9 13 13 C 1.38603 * 119.10045 * 0.51025 * 12 11 10 14 14 C 1.50700 * 120.80075 * 179.72738 * 13 12 11 15 15 C 1.53006 * 117.49594 * 8.76779 * 14 13 12 16 16 C 1.52999 * 117.49534 * 300.10826 * 14 13 12 17 17 C 1.38603 * 118.39800 * 359.74879 * 13 12 11 18 18 N 1.31787 * 119.12561 * 90.00231 * 10 9 7 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 1.07994 * 120.44829 * 180.27784 * 12 11 10 23 23 H 1.08995 * 115.54690 * 154.43839 * 14 13 12 24 24 H 1.09000 * 117.49885 * 359.97438 * 15 14 13 25 25 H 1.08991 * 117.49326 * 145.01835 * 15 14 13 26 26 H 1.08996 * 117.49594 * 214.97379 * 16 14 13 27 27 H 1.08992 * 117.50080 * 0.02562 * 16 14 13 28 28 H 1.08000 * 120.44469 * 179.97438 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.6429 -4.1306 -1.1639 12 6 3.5059 -5.1329 -1.2075 13 6 3.9670 -5.6777 -0.0194 14 6 4.9454 -6.8238 -0.0244 15 6 5.5612 -7.2211 -1.3676 16 6 4.5110 -8.1205 -0.7106 17 6 3.5061 -5.1432 1.1735 18 7 2.6469 -4.1374 1.1387 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 3.8435 -5.5235 -2.1561 23 1 5.5735 -6.9095 0.8623 24 1 5.2582 -6.6537 -2.2476 25 1 6.5942 -7.5685 -1.3644 26 1 4.8538 -9.0593 -0.2756 27 1 3.5178 -8.1444 -1.1587 28 1 3.8432 -5.5426 2.1186 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259987840.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:27 Heat of formation + Delta-G solvation = 62.324208 kcal Electronic energy + Delta-G solvation = -12264.361380 eV Core-core repulsion = 10087.996949 eV Total energy + Delta-G solvation = -2176.364431 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 204.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.53965 -37.33738 -33.41957 -33.03841 -31.43405 -28.20849 -24.58084 -24.05566 -22.42271 -22.13948 -20.39739 -17.19427 -16.57689 -16.29017 -15.41380 -14.62667 -14.32861 -14.03359 -13.23994 -12.72527 -12.36791 -12.03113 -11.61056 -11.34784 -11.12672 -10.76752 -10.69269 -10.62630 -10.28942 -10.22376 -9.67628 -9.49622 -8.51443 -8.41498 -8.36400 -6.04987 -4.07359 1.45954 1.70337 3.33011 3.38160 3.42797 3.74740 4.36581 4.49099 4.57552 4.71825 4.81096 4.85538 4.92477 5.08960 5.15683 5.32348 5.50203 5.65309 5.76048 5.93197 5.99559 6.25020 6.29319 7.05325 7.48625 7.50769 7.69933 7.88992 8.23488 8.92192 8.93415 9.54242 11.06053 Molecular weight = 204.10amu Principal moments of inertia in cm(-1) A = 0.065179 B = 0.006914 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.481470 B = 4048.555811 C = 4138.452559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.505 4.505 8 H 0.053 0.947 9 C 0.078 3.922 10 C 0.356 3.644 11 N -0.515 5.515 12 C 0.143 3.857 13 C -0.200 4.200 14 C -0.098 4.098 15 C -0.179 4.179 16 C -0.172 4.172 17 C 0.150 3.850 18 N -0.515 5.515 19 H 0.264 0.736 20 H 0.048 0.952 21 H 0.048 0.952 22 H 0.154 0.846 23 H 0.113 0.887 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.952 -13.406 -0.760 16.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.544 4.544 8 H 0.072 0.928 9 C 0.040 3.960 10 C 0.092 3.908 11 N -0.228 5.228 12 C -0.025 4.025 13 C -0.204 4.204 14 C -0.117 4.117 15 C -0.215 4.215 16 C -0.209 4.209 17 C -0.018 4.018 18 N -0.228 5.228 19 H 0.073 0.927 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.171 0.829 23 H 0.131 0.869 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.103 -12.503 -0.751 14.919 hybrid contribution 1.215 0.118 -0.004 1.221 sum 9.318 -12.385 -0.756 15.518 Atomic orbital electron populations 1.69947 1.05958 1.26991 1.50185 1.24936 0.94950 0.99195 0.95022 0.86441 0.79713 0.82805 0.78162 1.20518 1.21007 1.19899 1.20782 0.92765 0.89339 1.51528 0.92836 1.18254 0.91288 0.86868 0.99630 1.24472 0.91833 0.92575 0.81887 1.68493 1.12196 1.10709 1.31393 1.23059 0.91020 0.90833 0.97547 1.20704 1.02690 1.00782 0.96244 1.20723 0.99989 0.93683 0.97342 1.23058 0.98479 1.03698 0.96309 1.23047 0.99903 0.94003 1.03986 1.23010 0.90824 0.90580 0.97346 1.68486 1.12241 1.10462 1.31592 0.92678 0.93354 0.93378 0.82858 0.86882 0.88394 0.88409 0.88507 0.88690 0.82631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.94 15 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 15 3 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 6 H -0.27 -6.65 7.11 56.52 0.40 -6.25 15 7 C -0.50 -14.78 9.09 -34.44 -0.31 -15.09 15 8 H 0.05 1.58 7.74 -52.49 -0.41 1.17 15 9 C 0.08 2.14 5.41 -29.03 -0.16 1.98 15 10 C 0.36 8.60 6.83 -157.20 -1.07 7.52 15 11 N -0.51 -11.42 10.33 -10.73 -0.11 -11.53 15 12 C 0.14 2.48 10.57 -17.20 -0.18 2.29 15 13 C -0.20 -3.08 5.64 -104.35 -0.59 -3.67 15 14 C -0.10 -1.09 6.08 -91.77 -0.56 -1.65 15 15 C -0.18 -1.69 9.89 -26.69 -0.26 -1.95 15 16 C -0.17 -1.64 10.18 -26.69 -0.27 -1.91 15 17 C 0.15 2.58 11.04 -17.20 -0.19 2.39 15 18 N -0.51 -11.39 10.33 -10.73 -0.11 -11.50 15 19 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 20 H 0.05 1.37 8.14 -51.93 -0.42 0.95 15 21 H 0.05 1.37 8.14 -51.93 -0.42 0.95 15 22 H 0.15 2.13 6.17 -52.49 -0.32 1.81 15 23 H 0.11 1.09 8.14 -51.93 -0.42 0.67 15 24 H 0.10 0.94 6.26 -51.93 -0.33 0.61 15 25 H 0.10 0.77 8.14 -51.93 -0.42 0.34 15 26 H 0.10 0.75 8.14 -51.93 -0.42 0.33 15 27 H 0.09 0.97 8.14 -51.93 -0.42 0.54 15 28 H 0.16 2.07 8.06 -52.49 -0.42 1.65 15 LS Contribution 250.39 15.07 3.77 3.77 Total: -1.00 -31.90 250.39 -7.58 -39.48 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: -3.15 Total: -2.90 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -3.69 Total: -8.42 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.51 Total: -48.98 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -31.90 -7.58 -39.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259987840.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.799 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds