Wall clock time and date at job start Thu Apr 9 2020 14:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.31797 * 119.11985 * 269.72343 * 10 9 7 12 12 C 1.32337 * 120.81906 * 179.76089 * 11 10 9 13 13 C 1.38603 * 119.10045 * 0.51025 * 12 11 10 14 14 C 1.50700 * 120.80075 * 179.72738 * 13 12 11 15 15 C 1.53006 * 117.49594 * 8.76779 * 14 13 12 16 16 C 1.52999 * 117.49534 * 300.10826 * 14 13 12 17 17 C 1.38603 * 118.39800 * 359.74879 * 13 12 11 18 18 N 1.31787 * 119.12561 * 90.00231 * 10 9 7 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 1.07994 * 120.44829 * 180.27784 * 12 11 10 23 23 H 1.08995 * 115.54690 * 154.43839 * 14 13 12 24 24 H 1.09000 * 117.49885 * 359.97438 * 15 14 13 25 25 H 1.08991 * 117.49326 * 145.01835 * 15 14 13 26 26 H 1.08996 * 117.49594 * 214.97379 * 16 14 13 27 27 H 1.08992 * 117.50080 * 0.02562 * 16 14 13 28 28 H 1.08000 * 120.44469 * 179.97438 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.6429 -4.1306 -1.1639 12 6 3.5059 -5.1329 -1.2075 13 6 3.9670 -5.6777 -0.0194 14 6 4.9454 -6.8238 -0.0244 15 6 5.5612 -7.2211 -1.3676 16 6 4.5110 -8.1205 -0.7106 17 6 3.5061 -5.1432 1.1735 18 7 2.6469 -4.1374 1.1387 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 3.8435 -5.5235 -2.1561 23 1 5.5735 -6.9095 0.8623 24 1 5.2582 -6.6537 -2.2476 25 1 6.5942 -7.5685 -1.3644 26 1 4.8538 -9.0593 -0.2756 27 1 3.5178 -8.1444 -1.1587 28 1 3.8432 -5.5426 2.1186 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259987840.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:26 Heat of formation + Delta-G solvation = 41.893387 kcal Electronic energy + Delta-G solvation = -12265.247327 eV Core-core repulsion = 10087.996949 eV Total energy + Delta-G solvation = -2177.250378 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 204.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.02377 -38.30958 -35.48325 -34.59909 -33.13066 -30.06356 -26.33965 -25.56539 -23.78210 -23.15484 -21.63354 -18.68159 -18.61178 -17.83025 -16.72743 -16.27786 -15.71942 -15.35807 -14.57474 -14.41126 -14.14544 -13.53292 -13.45320 -12.78671 -12.63383 -12.33827 -12.17160 -12.03898 -11.82031 -11.56028 -11.49732 -11.23575 -10.65179 -10.05298 -9.75351 -8.25984 -6.38349 -0.01604 0.26469 1.38023 1.40664 1.51688 2.36532 2.74899 3.05579 3.15023 3.21005 3.40657 3.59316 3.73810 3.92029 4.08014 4.20851 4.51160 4.66829 4.78732 4.85603 5.05581 5.18720 5.24940 5.28902 5.36482 5.53296 5.63490 6.03039 6.21278 6.66917 7.28115 7.33323 8.85582 Molecular weight = 204.10amu Principal moments of inertia in cm(-1) A = 0.065179 B = 0.006914 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.481470 B = 4048.555811 C = 4138.452559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.974 3.026 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.527 4.527 8 H 0.044 0.956 9 C 0.088 3.912 10 C 0.324 3.676 11 N -0.543 5.543 12 C 0.129 3.871 13 C -0.169 4.169 14 C -0.116 4.116 15 C -0.170 4.170 16 C -0.161 4.161 17 C 0.138 3.862 18 N -0.542 5.542 19 H 0.269 0.731 20 H 0.021 0.979 21 H 0.021 0.979 22 H 0.188 0.812 23 H 0.137 0.863 24 H 0.095 0.905 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.085 0.915 28 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.495 -14.778 -0.787 18.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.566 4.566 8 H 0.062 0.938 9 C 0.050 3.950 10 C 0.059 3.941 11 N -0.257 5.257 12 C -0.036 4.036 13 C -0.173 4.173 14 C -0.135 4.135 15 C -0.206 4.206 16 C -0.197 4.197 17 C -0.028 4.028 18 N -0.256 5.256 19 H 0.078 0.922 20 H 0.040 0.960 21 H 0.039 0.961 22 H 0.205 0.795 23 H 0.155 0.845 24 H 0.113 0.887 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.104 0.896 28 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 10.659 -13.907 -0.783 17.540 hybrid contribution 0.497 0.347 -0.009 0.606 sum 11.156 -13.560 -0.792 17.578 Atomic orbital electron populations 1.70062 1.07542 1.28323 1.50441 1.25897 0.95927 1.03058 0.94123 0.85325 0.78358 0.77906 0.78681 1.19436 1.19717 1.19430 1.21011 0.92447 0.90838 1.52266 0.93769 1.17835 0.91676 0.88584 0.96926 1.23599 0.93557 0.93501 0.83435 1.68327 1.13884 1.12640 1.30852 1.23667 0.90166 0.89795 0.99984 1.21136 1.01100 1.00374 0.94680 1.20857 1.00105 0.92911 0.99667 1.23202 0.99792 1.02874 0.94775 1.23134 0.99694 0.94026 1.02886 1.23721 0.89733 0.89392 0.99931 1.68330 1.13920 1.12406 1.30975 0.92162 0.96043 0.96114 0.79503 0.84532 0.88694 0.86089 0.86056 0.89619 0.78579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.96 13.29 21.45 0.28 -56.68 15 2 C 0.01 0.53 5.46 84.66 0.46 0.99 15 3 Si 0.97 45.80 29.54 68.60 2.03 47.82 15 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 5 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 15 7 C -0.53 -32.14 9.09 25.60 0.23 -31.90 15 8 H 0.04 2.70 7.74 -2.91 -0.02 2.68 15 9 C 0.09 5.17 5.41 29.10 0.16 5.33 15 10 C 0.32 16.34 6.83 138.75 0.95 17.29 15 11 N -0.54 -24.68 10.33 -187.85 -1.94 -26.62 15 12 C 0.13 4.34 10.57 84.70 0.90 5.24 15 13 C -0.17 -4.83 5.64 -19.69 -0.11 -4.94 15 14 C -0.12 -2.11 6.08 -11.54 -0.07 -2.18 15 15 C -0.17 -2.45 9.89 30.62 0.30 -2.15 15 16 C -0.16 -2.35 10.18 30.62 0.31 -2.04 15 17 C 0.14 4.55 11.04 84.71 0.93 5.49 15 18 N -0.54 -24.49 10.33 -187.85 -1.94 -26.43 15 19 H 0.27 15.38 8.31 -92.70 -0.77 14.61 15 20 H 0.02 1.32 8.14 -2.38 -0.02 1.30 15 21 H 0.02 1.27 8.14 -2.39 -0.02 1.26 15 22 H 0.19 4.78 6.17 -2.91 -0.02 4.76 15 23 H 0.14 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.09 1.45 6.26 -2.39 -0.01 1.44 15 25 H 0.12 1.26 8.14 -2.39 -0.02 1.24 15 26 H 0.12 1.25 8.14 -2.39 -0.02 1.23 15 27 H 0.09 1.46 8.14 -2.39 -0.02 1.44 15 28 H 0.20 4.64 8.06 -2.91 -0.02 4.62 15 Total: -1.00 -72.57 250.39 3.65 -68.92 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: 1.15 Total: 1.86 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 4.06 Total: -8.87 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -3.60 Total: -109.73 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -72.57 3.65 -68.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259987840.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.813 kcal (2) G-P(sol) polarization free energy of solvation -72.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds