Wall clock time and date at job start Thu Apr 9 2020 14:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47184 * 2 1 4 4 C 1.38256 * 120.00636 * 265.18719 * 3 2 1 5 5 C 1.38203 * 120.00216 * 180.21298 * 4 3 2 6 6 C 1.38264 * 120.00427 * 359.85532 * 5 4 3 7 7 C 1.50693 * 119.99957 * 179.97438 * 6 5 4 8 8 C 1.38210 * 119.99673 * 359.95965 * 6 5 4 9 9 C 1.38218 * 119.99772 * 85.00299 * 3 2 1 10 10 C 1.50698 * 120.00269 * 359.97438 * 9 3 2 11 11 C 1.50706 * 109.47294 * 84.72380 * 10 9 3 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47216 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 119.99848 * 15 13 11 18 18 H 1.48501 * 109.47057 * 239.99829 * 15 13 11 19 19 H 1.08990 * 109.47487 * 179.97438 * 1 2 3 20 20 H 1.09005 * 109.46708 * 300.00236 * 1 2 3 21 21 H 1.09002 * 109.46883 * 59.99366 * 1 2 3 22 22 H 1.09003 * 109.47055 * 240.00158 * 2 1 3 23 23 H 1.09002 * 109.46883 * 120.00634 * 2 1 3 24 24 H 1.08005 * 119.99309 * 0.04619 * 4 3 2 25 25 H 1.08007 * 120.00176 * 179.83558 * 5 4 3 26 26 H 1.09004 * 109.46890 * 269.97346 * 7 6 5 27 27 H 1.09001 * 109.47453 * 29.97864 * 7 6 5 28 28 H 1.09008 * 109.46924 * 149.98070 * 7 6 5 29 29 H 1.07999 * 119.99909 * 180.02562 * 8 6 5 30 30 H 1.09001 * 109.46665 * 324.72762 * 10 9 3 31 31 H 1.09000 * 109.47722 * 204.73093 * 10 9 3 32 32 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3575 2.0391 -1.1930 5 6 2.8224 3.3406 -1.1926 6 6 2.9595 4.0254 0.0007 7 6 3.4669 5.4444 0.0012 8 6 2.6308 3.4086 1.1931 9 6 2.1644 2.1070 1.1925 10 6 1.8055 1.4347 2.4926 11 6 2.9821 0.6317 2.9844 12 1 3.8983 0.6107 2.4129 13 6 2.8890 -0.0761 4.1639 14 7 1.7731 -0.0509 4.8596 15 14 4.3476 -1.0709 4.7740 16 1 5.4744 -0.9355 3.8162 17 1 4.7671 -0.5680 6.1068 18 1 3.9608 -2.5004 4.8835 19 1 -0.3634 -1.0275 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.2508 1.5041 -2.1251 25 1 3.0790 3.8228 -2.1244 26 1 4.5534 5.4416 0.0889 27 1 3.1787 5.9337 -0.9292 28 1 3.0357 5.9842 0.8444 29 1 2.7374 3.9436 2.1252 30 1 0.9538 0.7728 2.3362 31 1 1.5466 2.1911 3.2335 32 1 1.7077 -0.5486 5.6896 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259995309.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:31 Heat of formation + Delta-G solvation = -24.087169 kcal Electronic energy + Delta-G solvation = -12908.547661 eV Core-core repulsion = 10831.976494 eV Total energy + Delta-G solvation = -2076.571166 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.47938 -36.03887 -34.94449 -32.84939 -31.76017 -29.04330 -27.37059 -25.34918 -23.66214 -22.53439 -20.57235 -18.49989 -16.80482 -16.71785 -16.44993 -15.49082 -14.80568 -14.53905 -14.30233 -14.26555 -13.92674 -13.56043 -13.28972 -12.91995 -12.87721 -12.64352 -12.53393 -12.25966 -12.21434 -11.79254 -11.50034 -11.42443 -11.10204 -10.58588 -9.47874 -9.09157 -8.19073 -6.31119 0.61620 0.71029 1.37085 1.37968 1.51090 2.39006 3.02207 3.11045 4.03294 4.09521 4.22208 4.30596 4.35727 4.61130 4.66249 4.72028 4.81740 4.89045 4.96504 5.04568 5.09830 5.22705 5.26444 5.30316 5.40193 5.54183 5.59851 5.71790 5.78260 5.88318 6.16500 6.19223 6.38232 6.80862 7.36270 8.90027 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.030048 B = 0.010420 C = 0.008800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.627769 B = 2686.376082 C = 3181.144741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 C -0.104 4.104 4 C -0.118 4.118 5 C -0.139 4.139 6 C -0.099 4.099 7 C -0.105 4.105 8 C -0.146 4.146 9 C -0.066 4.066 10 C 0.058 3.942 11 C -0.517 4.517 12 H 0.048 0.952 13 C 0.006 3.994 14 N -0.929 5.929 15 Si 0.960 3.040 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.275 1.275 19 H 0.065 0.935 20 H 0.031 0.969 21 H 0.066 0.934 22 H 0.082 0.918 23 H 0.055 0.945 24 H 0.143 0.857 25 H 0.149 0.851 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.018 0.982 31 H -0.010 1.010 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 4.990 -11.826 12.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.122 4.122 3 C -0.104 4.104 4 C -0.135 4.135 5 C -0.157 4.157 6 C -0.100 4.100 7 C -0.162 4.162 8 C -0.164 4.164 9 C -0.066 4.066 10 C 0.021 3.979 11 C -0.555 4.555 12 H 0.066 0.934 13 C -0.192 4.192 14 N -0.569 5.569 15 Si 0.785 3.215 16 H -0.191 1.191 17 H -0.203 1.203 18 H -0.200 1.200 19 H 0.084 0.916 20 H 0.051 0.949 21 H 0.085 0.915 22 H 0.101 0.899 23 H 0.074 0.926 24 H 0.161 0.839 25 H 0.166 0.834 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.036 0.964 31 H 0.008 0.992 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.360 4.930 -11.672 12.743 hybrid contribution 0.453 -0.607 1.104 1.339 sum 1.813 4.323 -10.568 11.561 Atomic orbital electron populations 1.21646 0.94546 1.01824 1.01175 1.20501 0.96526 0.92784 1.02398 1.19920 1.00964 0.96738 0.92738 1.21249 0.99507 0.95612 0.97173 1.21197 1.01798 0.94786 0.97913 1.20199 0.99303 0.97824 0.92623 1.20769 1.01248 0.90702 1.03438 1.21012 1.02374 0.95059 0.97995 1.20339 0.96340 0.94076 0.95875 1.18115 0.96340 0.94113 0.89283 1.21279 0.98948 1.28743 1.06512 0.93372 1.25861 0.98744 0.97815 0.96790 1.70090 1.27660 1.43249 1.15874 0.85465 0.79357 0.78464 0.78212 1.19140 1.20287 1.20016 0.91614 0.94948 0.91452 0.89901 0.92633 0.83936 0.83368 0.90744 0.89594 0.91832 0.87848 0.96406 0.99151 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 9.72 71.98 0.70 -3.86 16 2 C -0.08 -3.20 5.38 29.85 0.16 -3.04 16 3 C -0.10 -4.14 5.13 -19.87 -0.10 -4.24 16 4 C -0.12 -3.79 9.68 22.27 0.22 -3.58 16 5 C -0.14 -4.13 9.70 22.27 0.22 -3.92 16 6 C -0.10 -3.28 5.88 -19.87 -0.12 -3.40 16 7 C -0.11 -2.53 10.01 71.23 0.71 -1.82 16 8 C -0.15 -6.08 9.34 22.27 0.21 -5.87 16 9 C -0.07 -3.07 5.07 -19.86 -0.10 -3.17 16 10 C 0.06 3.20 4.43 29.10 0.13 3.33 16 11 C -0.52 -30.04 8.27 25.60 0.21 -29.83 16 12 H 0.05 2.81 7.74 -2.91 -0.02 2.78 16 13 C 0.01 0.34 5.46 84.65 0.46 0.80 16 14 N -0.93 -56.47 13.29 21.45 0.28 -56.18 16 15 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 18 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 19 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 20 H 0.03 1.25 6.79 -2.38 -0.02 1.24 16 21 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 22 H 0.08 2.58 8.05 -2.39 -0.02 2.56 16 23 H 0.05 2.52 6.40 -2.39 -0.02 2.51 16 24 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 25 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 26 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.09 1.61 8.09 -2.39 -0.02 1.59 16 28 H 0.06 1.51 8.09 -2.38 -0.02 1.49 16 29 H 0.10 4.35 8.06 -2.91 -0.02 4.33 16 30 H 0.02 1.02 5.63 -2.39 -0.01 1.01 16 31 H -0.01 -0.59 8.05 -2.39 -0.02 -0.61 16 32 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -65.47 267.99 6.09 -59.38 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 1.08 Total: 8.36 kcal Atomic # 6 Polarization: -61.28 SS G_CDS: 2.70 Total: -58.59 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.28 Total: -56.18 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -65.47 6.09 -59.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259995309.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.297 kcal (2) G-P(sol) polarization free energy of solvation -65.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds