Wall clock time and date at job start Thu Apr 9 2020 14:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00237 * 2 1 4 4 H 1.48498 * 109.46893 * 240.00028 * 3 2 1 5 5 H 1.48496 * 109.46651 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47553 * 119.99802 * 3 2 1 7 7 C 1.37881 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00498 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99835 * 0.02562 * 7 2 1 10 10 H 1.09002 * 108.87500 * 59.99758 * 9 7 2 11 11 C 1.54247 * 108.81721 * 301.43680 * 9 7 2 12 12 C 1.50471 * 108.52277 * 159.31847 * 11 9 7 13 13 C 1.54070 * 112.50007 * 94.15184 * 12 11 9 14 14 C 1.54067 * 112.81524 * 318.28049 * 13 12 11 15 15 C 1.50473 * 112.49554 * 318.28510 * 14 13 12 16 16 C 1.45541 * 108.89842 * 178.60208 * 9 7 2 17 17 F 1.39904 * 108.89141 * 303.34768 * 16 9 7 18 18 F 1.39904 * 108.89345 * 61.83152 * 16 9 7 19 19 H 0.96995 * 119.99599 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.62812 * 279.02811 * 11 9 7 21 21 H 1.08997 * 109.62934 * 39.60621 * 11 9 7 22 22 H 1.08999 * 108.87692 * 333.36873 * 12 11 9 23 23 H 1.09000 * 108.87644 * 214.92661 * 12 11 9 24 24 H 1.08999 * 108.80889 * 197.42107 * 13 12 11 25 25 H 1.08998 * 108.72729 * 79.08022 * 13 12 11 26 26 H 1.09004 * 108.87695 * 197.50620 * 14 13 12 27 27 H 1.08997 * 108.79824 * 79.00738 * 14 13 12 28 28 H 1.09001 * 109.62998 * 334.44820 * 15 14 13 29 29 H 1.09000 * 109.63095 * 213.86249 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6285 -2.5469 -0.8929 11 6 0.3423 -2.5490 1.2459 12 6 -0.7486 -3.5561 1.0016 13 6 -0.3981 -4.9509 1.5545 14 6 1.0655 -5.3496 1.2856 15 6 1.5194 -4.9744 -0.0991 16 6 2.2075 -3.5957 -0.0324 17 9 3.0305 -3.4453 -1.1538 18 9 3.0002 -3.5402 1.1190 19 1 -0.4849 0.8400 -0.0004 20 1 0.9284 -2.8477 2.1151 21 1 -0.0978 -1.5668 1.4176 22 1 -0.9215 -3.6354 -0.0717 23 1 -1.6641 -3.2073 1.4794 24 1 -1.0541 -5.6877 1.0910 25 1 -0.5714 -4.9544 2.6307 26 1 1.1658 -6.4279 1.4096 27 1 1.7050 -4.8504 2.0137 28 1 0.6581 -4.9219 -0.7650 29 1 2.2255 -5.7187 -0.4672 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260009039.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:39 Heat of formation + Delta-G solvation = -120.171493 kcal Electronic energy + Delta-G solvation = -14424.678538 eV Core-core repulsion = 11789.711313 eV Total energy + Delta-G solvation = -2634.967225 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.102 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.97756 -45.77408 -37.24454 -33.48277 -30.78685 -30.44625 -25.88558 -23.67836 -22.89903 -19.60661 -18.67879 -16.88118 -16.32785 -15.52429 -15.49117 -14.29910 -14.22005 -13.43440 -12.78427 -12.71537 -12.41904 -12.18408 -11.86584 -11.44557 -11.39183 -11.08795 -10.89754 -10.84515 -10.44538 -10.29119 -10.20698 -9.64490 -9.58730 -9.15199 -8.89921 -8.32279 -6.03636 -4.10945 3.33622 3.36564 3.41307 4.40857 4.72570 5.11724 5.23814 5.31136 5.50640 5.70807 5.79160 5.89975 6.04849 6.16151 6.17144 6.31785 6.47930 6.62867 6.64107 6.71851 6.95442 7.13059 7.30901 7.61744 7.81569 7.98690 8.28630 8.89806 9.52730 11.01313 Molecular weight = 204.10amu Principal moments of inertia in cm(-1) A = 0.041069 B = 0.013985 C = 0.011604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.614254 B = 2001.706682 C = 2412.376869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.059 0.941 9 C -0.006 4.006 10 H 0.050 0.950 11 C -0.105 4.105 12 C -0.116 4.116 13 C -0.115 4.115 14 C -0.123 4.123 15 C -0.155 4.155 16 C 0.311 3.689 17 F -0.215 7.215 18 F -0.211 7.211 19 H 0.262 0.738 20 H 0.040 0.960 21 H 0.105 0.895 22 H 0.053 0.947 23 H 0.047 0.953 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.598 -7.896 1.710 8.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.550 4.550 8 H 0.078 0.922 9 C -0.025 4.025 10 H 0.068 0.932 11 C -0.143 4.143 12 C -0.153 4.153 13 C -0.153 4.153 14 C -0.161 4.161 15 C -0.193 4.193 16 C 0.275 3.725 17 F -0.196 7.196 18 F -0.192 7.192 19 H 0.072 0.928 20 H 0.059 0.941 21 H 0.123 0.877 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.712 -7.761 1.706 7.978 hybrid contribution 0.564 0.898 -0.086 1.064 sum -0.148 -6.863 1.620 7.053 Atomic orbital electron populations 1.69873 1.05818 1.26706 1.50210 1.24888 0.94901 0.99135 0.94851 0.86579 0.79582 0.82660 0.78808 1.20172 1.21231 1.20151 1.21026 0.93062 0.89859 1.51023 0.92227 1.18680 0.93887 0.92229 0.97678 0.93202 1.21280 0.95498 1.00598 0.96912 1.21423 0.99525 0.93882 1.00497 1.21963 0.95241 0.97689 1.00359 1.21276 0.97710 1.00402 0.96688 1.22328 1.01598 0.95580 0.99807 1.20066 0.84372 0.97403 0.70653 1.92915 1.75637 1.97119 1.53924 1.92847 1.77194 1.97522 1.51634 0.92832 0.94144 0.87690 0.92788 0.93392 0.93276 0.92772 0.92432 0.90340 0.89370 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.84 11.25 55.43 0.62 -24.22 15 2 C 0.06 1.76 5.17 -17.82 -0.09 1.67 15 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 15 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 7 C -0.51 -14.38 7.76 -34.44 -0.27 -14.64 15 8 H 0.06 1.73 7.54 -52.49 -0.40 1.33 15 9 C -0.01 -0.15 1.24 -94.64 -0.12 -0.27 15 10 H 0.05 1.32 7.47 -51.93 -0.39 0.93 15 11 C -0.10 -2.42 4.74 -27.34 -0.13 -2.55 15 12 C -0.12 -2.21 5.31 -27.44 -0.15 -2.35 15 13 C -0.11 -1.81 5.85 -25.62 -0.15 -1.96 15 14 C -0.12 -1.99 5.26 -27.44 -0.14 -2.13 15 15 C -0.15 -2.74 5.24 -27.35 -0.14 -2.88 15 16 C 0.31 6.97 1.40 -29.60 -0.04 6.93 15 17 F -0.21 -5.12 16.34 2.25 0.04 -5.09 15 18 F -0.21 -4.90 14.00 2.25 0.03 -4.86 15 19 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 20 H 0.04 0.91 6.36 -51.93 -0.33 0.58 15 21 H 0.10 2.73 5.66 -51.93 -0.29 2.44 15 22 H 0.05 1.05 6.63 -51.93 -0.34 0.71 15 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 25 H 0.05 0.80 8.14 -51.93 -0.42 0.37 15 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 15 27 H 0.08 1.39 5.62 -51.93 -0.29 1.10 15 28 H 0.09 1.50 6.98 -51.93 -0.36 1.14 15 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 LS Contribution 229.70 15.07 3.46 3.46 Total: -1.00 -28.34 229.70 -5.75 -34.09 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -3.65 Total: -1.79 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -1.23 Total: -18.18 kcal Atomic # 7 Polarization: -24.84 SS G_CDS: 0.62 Total: -24.22 kcal Atomic # 9 Polarization: -10.02 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -28.34 -5.75 -34.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260009039.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.079 kcal (2) G-P(sol) polarization free energy of solvation -28.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds