Wall clock time and date at job start Thu Apr 9 2020 14:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32076 * 125.94965 * 2 1 4 4 C 1.33355 * 110.04316 * 179.73612 * 3 2 1 5 5 N 1.33530 * 131.89508 * 179.97438 * 4 3 2 6 6 C 1.31331 * 120.86155 * 179.97438 * 5 4 3 7 7 C 1.40071 * 120.96779 * 0.03787 * 6 5 4 8 8 N 1.31157 * 119.78666 * 359.97438 * 7 6 5 9 9 N 1.37325 * 108.57817 * 0.02562 * 4 3 2 10 10 C 1.38036 * 107.10643 * 359.97438 * 9 4 3 11 11 C 1.39880 * 126.91848 * 180.02562 * 10 9 4 12 12 H 1.07999 * 119.99695 * 205.31378 * 11 10 9 13 13 C 1.39944 * 119.99806 * 25.31653 * 11 10 9 14 14 N 1.30985 * 120.00482 * 16.24038 * 13 11 10 15 15 Si 1.86805 * 119.99844 * 196.24178 * 13 11 10 16 16 H 1.48508 * 109.46958 * 60.00123 * 15 13 11 17 17 H 1.48504 * 109.47203 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47006 * 300.00160 * 15 13 11 19 19 H 1.09000 * 109.47498 * 95.34709 * 1 2 3 20 20 H 1.08995 * 109.47497 * 215.34690 * 1 2 3 21 21 H 1.08998 * 109.46923 * 335.35054 * 1 2 3 22 22 H 1.08002 * 119.51470 * 179.97438 * 6 5 4 23 23 H 1.08005 * 120.11019 * 180.02562 * 7 6 5 24 24 H 0.96994 * 120.00062 * 174.35033 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2824 1.0692 0.0000 4 6 3.5648 0.7037 0.0058 5 7 4.6948 1.4152 0.0076 6 6 5.8656 0.8202 0.0142 7 6 5.9639 -0.5770 0.0187 8 7 4.8742 -1.3069 0.0168 9 7 3.6289 -0.6680 0.0091 10 6 2.3299 -1.1351 0.0058 11 6 1.9177 -2.4718 0.0079 12 1 0.9520 -2.7397 -0.3947 13 6 2.7565 -3.4619 0.5319 14 7 3.7660 -3.1277 1.2968 15 14 2.4367 -5.2602 0.1404 16 1 2.5104 -5.4678 -1.3282 17 1 3.4597 -6.1023 0.8108 18 1 1.0860 -5.6400 0.6268 19 1 -0.3634 -0.0958 -1.0232 20 1 -0.3634 -0.8382 0.5945 21 1 -0.3633 0.9340 0.4286 22 1 6.7657 1.4171 0.0151 23 1 6.9340 -1.0519 0.0245 24 1 4.2978 -3.8159 1.7261 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260017578.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:40 Heat of formation + Delta-G solvation = 123.388522 kcal Electronic energy + Delta-G solvation = -12829.622359 eV Core-core repulsion = 10552.365532 eV Total energy + Delta-G solvation = -2277.256827 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 204.071 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.79581 -37.27660 -34.13509 -32.90497 -31.04978 -29.67330 -27.35960 -25.66478 -22.69368 -22.19544 -19.19941 -18.06897 -17.08245 -16.03490 -15.32651 -14.78148 -14.59999 -13.27725 -13.00695 -12.54234 -12.16350 -11.92851 -11.53311 -11.39453 -11.18436 -10.92513 -10.86887 -10.70618 -10.60257 -9.56540 -9.08270 -8.25884 -8.18644 -7.19126 -6.89092 -4.52395 1.57698 2.40217 2.94706 2.97371 3.00427 3.36044 3.75869 3.89752 4.75519 4.77409 4.88910 5.35956 5.79603 6.03460 6.20685 6.26279 6.51272 6.58868 6.69577 6.87778 6.99611 7.47089 7.67702 7.93313 8.07211 8.33699 8.48212 9.21849 9.32392 9.95756 Molecular weight = 204.07amu Principal moments of inertia in cm(-1) A = 0.032236 B = 0.015935 C = 0.011015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.398184 B = 1756.731833 C = 2541.279681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.048 4.048 3 N -0.420 5.420 4 C 0.197 3.803 5 N -0.370 5.370 6 C -0.006 4.006 7 C 0.033 3.967 8 N -0.166 5.166 9 N -0.339 5.339 10 C 0.238 3.762 11 C -0.427 4.427 12 H 0.106 0.894 13 C 0.069 3.931 14 N -0.750 5.750 15 Si 0.925 3.075 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.263 1.263 19 H 0.054 0.946 20 H 0.066 0.934 21 H 0.057 0.943 22 H 0.159 0.841 23 H 0.176 0.824 24 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.256 -2.425 -1.132 2.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.195 4.195 3 N -0.142 5.142 4 C -0.144 4.144 5 N -0.085 5.085 6 C -0.194 4.194 7 C -0.166 4.166 8 N 0.022 4.978 9 N -0.125 5.125 10 C 0.121 3.879 11 C -0.462 4.462 12 H 0.124 0.876 13 C -0.155 4.155 14 N -0.374 5.374 15 Si 0.749 3.251 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.187 1.187 19 H 0.073 0.927 20 H 0.085 0.915 21 H 0.076 0.924 22 H 0.176 0.824 23 H 0.193 0.807 24 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.819 -1.656 -1.047 2.124 hybrid contribution 0.923 -1.639 0.124 1.885 sum 1.742 -3.295 -0.923 3.840 Atomic orbital electron populations 1.19730 0.87611 1.01509 1.00905 1.21218 0.95459 0.87081 1.15749 1.69449 0.97551 1.31012 1.16146 1.20705 0.92153 0.79566 1.21950 1.67106 0.96458 1.38619 1.06293 1.22708 0.94828 0.92817 1.09058 1.24544 0.98035 0.94277 0.99794 1.76185 0.88609 1.23593 1.09409 1.46991 1.03415 1.06391 1.55720 1.18435 0.78141 0.94651 0.96666 1.18721 1.03578 0.88548 1.35402 0.87641 1.26002 0.93281 1.02454 0.93794 1.69745 1.12353 1.36977 1.18333 0.86079 0.79140 0.79927 0.79988 1.18692 1.20219 1.18703 0.92693 0.91470 0.92419 0.82383 0.80729 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.77 10.21 36.00 0.37 -0.40 14 2 C -0.05 -1.22 7.21 -81.75 -0.59 -1.81 14 3 N -0.42 -11.52 11.23 -9.65 -0.11 -11.62 14 4 C 0.20 5.46 8.97 -321.90 -2.89 2.57 14 5 N -0.37 -9.22 10.47 -13.60 -0.14 -9.36 14 6 C -0.01 -0.12 11.22 -17.08 -0.19 -0.31 14 7 C 0.03 0.68 11.37 -17.15 -0.19 0.48 14 8 N -0.17 -4.18 9.31 30.72 0.29 -3.89 14 9 N -0.34 -9.39 3.85 -11.38 -0.04 -9.43 14 10 C 0.24 6.45 6.47 -83.72 -0.54 5.91 14 11 C -0.43 -10.76 9.02 -38.33 -0.35 -11.10 14 12 H 0.11 2.40 7.90 -52.49 -0.41 1.98 14 13 C 0.07 1.65 5.31 -17.27 -0.09 1.56 14 14 N -0.75 -19.03 10.57 55.55 0.59 -18.44 14 15 Si 0.92 17.82 29.60 -169.99 -5.03 12.79 14 16 H -0.26 -5.08 7.11 56.52 0.40 -4.68 14 17 H -0.28 -5.26 7.11 56.52 0.40 -4.86 14 18 H -0.26 -4.87 7.11 56.52 0.40 -4.47 14 19 H 0.05 0.96 8.14 -51.93 -0.42 0.54 14 20 H 0.07 1.22 8.09 -51.93 -0.42 0.80 14 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 14 22 H 0.16 2.39 8.06 -52.49 -0.42 1.96 14 23 H 0.18 2.60 8.06 -52.48 -0.42 2.18 14 24 H 0.29 6.65 8.31 -40.82 -0.34 6.31 14 LS Contribution 222.82 15.07 3.36 3.36 Total: -1.00 -32.08 222.82 -7.23 -39.31 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -1.66 Total: 0.38 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -4.48 Total: -3.10 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.58 Total: -52.75 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -32.08 -7.23 -39.31 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260017578.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.702 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds