Wall clock time and date at job start Thu Apr 9 2020 14:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32076 * 125.94965 * 2 1 4 4 C 1.33355 * 110.04316 * 179.73612 * 3 2 1 5 5 N 1.33530 * 131.89508 * 179.97438 * 4 3 2 6 6 C 1.31331 * 120.86155 * 179.97438 * 5 4 3 7 7 C 1.40071 * 120.96779 * 0.03787 * 6 5 4 8 8 N 1.31157 * 119.78666 * 359.97438 * 7 6 5 9 9 N 1.37325 * 108.57817 * 0.02562 * 4 3 2 10 10 C 1.38036 * 107.10643 * 359.97438 * 9 4 3 11 11 C 1.39880 * 126.91848 * 180.02562 * 10 9 4 12 12 H 1.07999 * 119.99695 * 205.31378 * 11 10 9 13 13 C 1.39944 * 119.99806 * 25.31653 * 11 10 9 14 14 N 1.30985 * 120.00482 * 16.24038 * 13 11 10 15 15 Si 1.86805 * 119.99844 * 196.24178 * 13 11 10 16 16 H 1.48508 * 109.46958 * 60.00123 * 15 13 11 17 17 H 1.48504 * 109.47203 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47006 * 300.00160 * 15 13 11 19 19 H 1.09000 * 109.47498 * 95.34709 * 1 2 3 20 20 H 1.08995 * 109.47497 * 215.34690 * 1 2 3 21 21 H 1.08998 * 109.46923 * 335.35054 * 1 2 3 22 22 H 1.08002 * 119.51470 * 179.97438 * 6 5 4 23 23 H 1.08005 * 120.11019 * 180.02562 * 7 6 5 24 24 H 0.96994 * 120.00062 * 174.35033 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2824 1.0692 0.0000 4 6 3.5648 0.7037 0.0058 5 7 4.6948 1.4152 0.0076 6 6 5.8656 0.8202 0.0142 7 6 5.9639 -0.5770 0.0187 8 7 4.8742 -1.3069 0.0168 9 7 3.6289 -0.6680 0.0091 10 6 2.3299 -1.1351 0.0058 11 6 1.9177 -2.4718 0.0079 12 1 0.9520 -2.7397 -0.3947 13 6 2.7565 -3.4619 0.5319 14 7 3.7660 -3.1277 1.2968 15 14 2.4367 -5.2602 0.1404 16 1 2.5104 -5.4678 -1.3282 17 1 3.4597 -6.1023 0.8108 18 1 1.0860 -5.6400 0.6268 19 1 -0.3634 -0.0958 -1.0232 20 1 -0.3634 -0.8382 0.5945 21 1 -0.3633 0.9340 0.4286 22 1 6.7657 1.4171 0.0151 23 1 6.9340 -1.0519 0.0245 24 1 4.2978 -3.8159 1.7261 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260017578.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:40 Heat of formation + Delta-G solvation = 103.000792 kcal Electronic energy + Delta-G solvation = -12830.506437 eV Core-core repulsion = 10552.365532 eV Total energy + Delta-G solvation = -2278.140905 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 204.071 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.63878 -39.07055 -35.94523 -34.73318 -32.79210 -31.52115 -29.06218 -27.47150 -24.49897 -24.00752 -21.03118 -19.90615 -18.89606 -17.83220 -17.05373 -16.62842 -16.19695 -14.94669 -14.68577 -14.18158 -13.89252 -13.63033 -13.19947 -13.02045 -12.86280 -12.73385 -12.55994 -12.49442 -12.15093 -11.32681 -10.90574 -10.11233 -10.03656 -9.04867 -8.68491 -6.39097 -0.15424 0.64415 1.39687 1.44581 1.53335 1.56135 2.08665 2.19741 2.91529 3.03908 3.06667 3.74001 4.19344 4.41686 4.54761 4.60834 4.99878 5.02586 5.09361 5.12606 5.26110 5.67106 5.93340 6.15408 6.25898 6.49285 6.67063 7.34266 7.48860 8.22292 Molecular weight = 204.07amu Principal moments of inertia in cm(-1) A = 0.032236 B = 0.015935 C = 0.011015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.398184 B = 1756.731833 C = 2541.279681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 C -0.078 4.078 3 N -0.452 5.452 4 C 0.160 3.840 5 N -0.407 5.407 6 C 0.035 3.965 7 C 0.043 3.957 8 N -0.204 5.204 9 N -0.352 5.352 10 C 0.199 3.801 11 C -0.453 4.453 12 H 0.119 0.881 13 C 0.029 3.971 14 N -0.786 5.786 15 Si 1.001 2.999 16 H -0.264 1.264 17 H -0.272 1.272 18 H -0.249 1.249 19 H 0.072 0.928 20 H 0.077 0.923 21 H 0.066 0.934 22 H 0.222 0.778 23 H 0.236 0.764 24 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.789 -3.389 -1.350 4.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.222 4.222 3 N -0.175 5.175 4 C -0.180 4.180 5 N -0.123 5.123 6 C -0.156 4.156 7 C -0.157 4.157 8 N -0.017 5.017 9 N -0.137 5.137 10 C 0.083 3.917 11 C -0.488 4.488 12 H 0.137 0.863 13 C -0.192 4.192 14 N -0.410 5.410 15 Si 0.821 3.179 16 H -0.188 1.188 17 H -0.196 1.196 18 H -0.173 1.173 19 H 0.091 0.909 20 H 0.095 0.905 21 H 0.085 0.915 22 H 0.238 0.762 23 H 0.252 0.748 24 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.260 -2.621 -1.261 3.684 hybrid contribution 0.804 -1.216 0.193 1.470 sum 3.064 -3.837 -1.068 5.025 Atomic orbital electron populations 1.19806 0.84469 1.02408 1.02295 1.22006 0.97505 0.86412 1.16324 1.69392 0.98205 1.32028 1.17828 1.21156 0.93085 0.80247 1.23509 1.67253 0.97029 1.39117 1.08884 1.23960 0.95373 0.93711 1.02584 1.25662 0.98955 0.94736 0.96376 1.76147 0.89012 1.25293 1.11200 1.47175 1.04275 1.06480 1.55770 1.19045 0.78663 0.95959 0.98026 1.19099 1.04758 0.88573 1.36350 0.86329 1.26942 0.92624 1.06755 0.92858 1.69832 1.13398 1.38473 1.19281 0.84949 0.79612 0.73989 0.79370 1.18850 1.19638 1.17266 0.90938 0.90465 0.91464 0.76207 0.74828 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.27 10.21 71.24 0.73 -0.54 14 2 C -0.08 -4.11 7.21 43.00 0.31 -3.80 14 3 N -0.45 -25.66 11.23 -184.45 -2.07 -27.73 14 4 C 0.16 8.99 8.97 261.17 2.34 11.34 14 5 N -0.41 -19.89 10.47 -196.94 -2.06 -21.95 14 6 C 0.03 1.27 11.22 85.21 0.96 2.23 14 7 C 0.04 1.59 11.37 85.24 0.97 2.56 14 8 N -0.20 -10.14 9.31 -56.72 -0.53 -10.67 14 9 N -0.35 -19.77 3.85 -189.91 -0.73 -20.50 14 10 C 0.20 11.14 6.47 39.04 0.25 11.39 14 11 C -0.45 -23.23 9.02 23.08 0.21 -23.02 14 12 H 0.12 5.46 7.90 -2.91 -0.02 5.44 14 13 C 0.03 1.37 5.31 85.23 0.45 1.82 14 14 N -0.79 -39.99 10.57 21.84 0.23 -39.76 14 15 Si 1.00 36.04 29.60 68.60 2.03 38.07 14 16 H -0.26 -9.47 7.11 99.48 0.71 -8.76 14 17 H -0.27 -9.41 7.11 99.48 0.71 -8.70 14 18 H -0.25 -8.34 7.11 99.48 0.71 -7.64 14 19 H 0.07 2.56 8.14 -2.39 -0.02 2.54 14 20 H 0.08 2.83 8.09 -2.39 -0.02 2.81 14 21 H 0.07 2.47 8.14 -2.39 -0.02 2.45 14 22 H 0.22 5.19 8.06 -2.91 -0.02 5.17 14 23 H 0.24 5.59 8.06 -2.91 -0.02 5.57 14 24 H 0.29 13.46 8.31 -92.71 -0.77 12.69 14 Total: -1.00 -73.32 222.82 4.31 -69.01 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 1.22 Total: 11.56 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 6.22 Total: 1.98 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -5.16 Total: -120.62 kcal Atomic # 14 Polarization: 36.04 SS G_CDS: 2.03 Total: 38.07 kcal Total: -73.32 4.31 -69.01 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260017578.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.012 kcal (2) G-P(sol) polarization free energy of solvation -73.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds