Wall clock time and date at job start Thu Apr 9 2020 14:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35909 * 116.99991 * 2 1 4 4 C 1.39058 * 119.94538 * 359.97438 * 3 2 1 5 5 C 1.38428 * 120.38162 * 180.02562 * 4 3 2 6 6 C 1.37776 * 120.28010 * 0.02562 * 5 4 3 7 7 C 1.40377 * 119.88558 * 359.97438 * 6 5 4 8 8 C 1.46322 * 120.18893 * 179.97438 * 7 6 5 9 9 C 1.38207 * 119.99911 * 326.73306 * 8 7 6 10 10 C 1.38810 * 119.99856 * 352.36851 * 9 8 7 11 11 H 1.07997 * 120.00169 * 340.16855 * 10 9 8 12 12 C 1.40657 * 119.99491 * 159.88287 * 10 9 8 13 13 N 1.30528 * 120.00704 * 0.27893 * 12 10 9 14 14 Si 1.86807 * 119.99679 * 180.27858 * 12 10 9 15 15 H 1.48493 * 109.47197 * 59.99827 * 14 12 10 16 16 H 1.48496 * 109.46949 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.46704 * 299.99995 * 14 12 10 18 18 C 1.38211 * 119.94887 * 180.25440 * 3 2 1 19 19 H 1.09005 * 109.46788 * 60.00097 * 1 2 3 20 20 H 1.09002 * 109.47074 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47502 * 300.00243 * 1 2 3 22 22 H 1.08002 * 119.80889 * 359.97438 * 4 3 2 23 23 H 1.08002 * 119.86189 * 180.02562 * 5 4 3 24 24 H 1.07994 * 120.05479 * 179.97438 * 6 5 4 25 25 H 1.07993 * 120.00293 * 146.73514 * 8 7 6 26 26 H 1.07997 * 119.99977 * 172.37214 * 9 8 7 27 27 H 0.96992 * 120.00692 * 179.97438 * 13 12 10 28 28 H 1.07998 * 120.13600 * 359.97438 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2875 2.3765 -0.0005 5 6 1.9065 3.6146 -0.0011 6 6 3.2814 3.7039 -0.0016 7 6 4.0583 2.5347 -0.0011 8 6 5.5189 2.6218 -0.0022 9 6 6.1486 3.6614 -0.6602 10 6 5.4100 4.5313 -1.4505 11 1 4.4371 4.2361 -1.8146 12 6 5.9263 5.7996 -1.7719 13 7 7.1021 6.1565 -1.3316 14 14 4.9290 6.9734 -2.8289 15 1 3.6391 7.2710 -2.1562 16 1 5.6898 8.2340 -3.0216 17 1 4.6657 6.3479 -4.1498 18 6 3.4262 1.2821 -0.0053 19 1 -0.3633 0.5139 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 0.2092 2.3153 -0.0014 23 1 1.3093 4.5145 -0.0011 24 1 3.7605 4.6718 -0.0025 25 1 6.1049 1.8739 0.5110 26 1 7.2153 3.7968 -0.5596 27 1 7.4582 7.0310 -1.5536 28 1 4.0158 0.3772 -0.0091 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260204792.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:43 Heat of formation + Delta-G solvation = -16.579192 kcal Electronic energy + Delta-G solvation = -12394.785384 eV Core-core repulsion = 10182.706693 eV Total energy + Delta-G solvation = -2212.078690 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 204.089 amu Computer time = -0.17 seconds Orbital eigenvalues (eV) -39.14878 -36.75172 -34.42351 -31.87701 -29.91749 -28.14568 -26.81601 -25.20727 -21.49254 -21.31685 -19.02273 -17.41921 -16.21437 -15.39049 -15.18638 -14.96947 -14.77201 -13.68013 -13.02829 -12.74031 -12.45245 -12.04517 -11.78273 -11.48508 -11.26530 -10.97231 -10.81084 -10.38544 -10.16298 -10.00019 -9.64118 -9.27752 -8.44462 -7.39506 -7.12862 -7.01352 -4.41745 2.22303 2.54118 2.91360 2.95696 3.00429 3.70687 3.78119 3.91226 4.82174 5.32626 5.36840 5.45228 5.63969 5.76964 5.87723 6.39787 6.49123 6.55428 6.74843 6.86911 7.10035 7.18268 7.29312 7.46730 7.65230 7.79852 7.98399 8.20617 8.28742 8.43824 8.78667 8.97097 9.90602 Molecular weight = 204.09amu Principal moments of inertia in cm(-1) A = 0.047927 B = 0.008570 C = 0.007598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.085464 B = 3266.479035 C = 3684.467628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.329 6.329 3 C 0.126 3.874 4 C -0.276 4.276 5 C -0.084 4.084 6 C -0.176 4.176 7 C 0.093 3.907 8 C -0.412 4.412 9 C 0.081 3.919 10 C -0.429 4.429 11 H 0.092 0.908 12 C 0.070 3.930 13 N -0.791 5.791 14 Si 0.914 3.086 15 H -0.258 1.258 16 H -0.276 1.276 17 H -0.260 1.260 18 C -0.208 4.208 19 H 0.048 0.952 20 H 0.088 0.912 21 H 0.048 0.952 22 H 0.105 0.895 23 H 0.104 0.896 24 H 0.133 0.867 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.289 0.711 28 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.979 -1.965 -0.066 8.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.243 6.243 3 C 0.082 3.918 4 C -0.295 4.295 5 C -0.103 4.103 6 C -0.194 4.194 7 C 0.092 3.908 8 C -0.433 4.433 9 C 0.059 3.941 10 C -0.456 4.456 11 H 0.110 0.890 12 C -0.151 4.151 13 N -0.414 5.414 14 Si 0.738 3.262 15 H -0.182 1.182 16 H -0.201 1.201 17 H -0.184 1.184 18 C -0.227 4.227 19 H 0.067 0.933 20 H 0.106 0.894 21 H 0.066 0.934 22 H 0.123 0.877 23 H 0.122 0.878 24 H 0.150 0.850 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.688 -1.939 -0.073 7.929 hybrid contribution -0.618 0.703 -0.459 1.042 sum -8.306 -1.236 -0.532 8.414 Atomic orbital electron populations 1.22844 0.79999 1.02474 1.00855 1.86001 1.20159 1.28470 1.89693 1.18856 0.92226 0.83074 0.97646 1.20755 0.98083 0.92644 1.17992 1.20660 0.94987 0.95692 0.98920 1.21622 0.92414 0.99758 1.05638 1.18743 0.94057 0.90081 0.87886 1.20995 0.90096 1.09180 1.23045 1.20478 0.96585 0.89370 0.87642 1.19960 1.04501 0.97886 1.23233 0.89049 1.26398 0.94515 0.99978 0.94217 1.69490 1.15677 1.21243 1.35012 0.86226 0.80612 0.78558 0.80816 1.18177 1.20082 1.18387 1.20515 0.90262 0.98174 1.13795 0.93327 0.89378 0.93351 0.87710 0.87812 0.84973 0.90096 0.89911 0.89978 0.87078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.81 101.05 0.99 1.45 15 2 O -0.33 -6.18 10.49 -19.45 -0.20 -6.38 15 3 C 0.13 2.66 6.68 -39.29 -0.26 2.39 15 4 C -0.28 -5.47 9.04 -39.21 -0.35 -5.82 15 5 C -0.08 -1.74 10.02 -39.68 -0.40 -2.14 15 6 C -0.18 -4.11 7.62 -38.95 -0.30 -4.41 15 7 C 0.09 2.28 5.39 -105.06 -0.57 1.71 15 8 C -0.41 -10.51 9.97 -36.34 -0.36 -10.88 15 9 C 0.08 2.10 9.29 -39.38 -0.37 1.74 15 10 C -0.43 -10.95 6.47 -38.46 -0.25 -11.20 15 11 H 0.09 2.36 5.80 -52.49 -0.30 2.05 15 12 C 0.07 1.68 5.51 -17.19 -0.09 1.59 15 13 N -0.79 -19.41 12.95 55.59 0.72 -18.69 15 14 Si 0.91 18.03 29.57 -169.99 -5.03 13.00 15 15 H -0.26 -5.04 7.11 56.52 0.40 -4.64 15 16 H -0.28 -5.23 7.11 56.52 0.40 -4.83 15 17 H -0.26 -5.11 7.11 56.52 0.40 -4.71 15 18 C -0.21 -4.80 9.75 -38.81 -0.38 -5.18 15 19 H 0.05 0.62 7.65 -51.93 -0.40 0.22 15 20 H 0.09 0.92 8.14 -51.93 -0.42 0.49 15 21 H 0.05 0.60 7.66 -51.93 -0.40 0.21 15 22 H 0.10 1.76 6.27 -52.49 -0.33 1.43 15 23 H 0.10 1.86 8.06 -52.49 -0.42 1.43 15 24 H 0.13 3.19 6.07 -52.49 -0.32 2.87 15 25 H 0.08 1.99 8.06 -52.49 -0.42 1.57 15 26 H 0.08 2.19 7.59 -52.49 -0.40 1.79 15 27 H 0.29 6.40 8.29 -40.82 -0.34 6.06 15 28 H 0.11 2.46 8.06 -52.49 -0.42 2.04 15 LS Contribution 245.51 15.07 3.70 3.70 Total: -1.00 -27.00 245.51 -6.12 -33.12 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -2.97 Total: 6.00 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: -2.34 Total: -30.75 kcal Atomic # 7 Polarization: -19.41 SS G_CDS: 0.72 Total: -18.69 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.20 Total: -6.38 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -27.00 -6.12 -33.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260204792.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.536 kcal (2) G-P(sol) polarization free energy of solvation -26.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.17 seconds