Wall clock time and date at job start Thu Apr 9 2020 14:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.50702 * 109.47392 * 119.99546 * 2 1 3 5 5 H 1.08008 * 119.99346 * 120.00114 * 4 2 1 6 6 C 1.37871 * 120.00187 * 300.00830 * 4 2 1 7 7 N 1.31509 * 120.00029 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99784 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47501 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47573 * 119.99878 * 8 6 4 11 11 H 1.48505 * 109.46799 * 239.99804 * 8 6 4 12 12 C 1.53001 * 109.47596 * 240.00265 * 2 1 3 13 13 C 1.53000 * 109.46886 * 64.99349 * 12 2 1 14 14 C 1.50703 * 109.46912 * 180.02562 * 13 12 2 15 15 C 1.38234 * 119.99770 * 269.72838 * 14 13 12 16 16 C 1.38239 * 119.99901 * 179.76875 * 15 14 13 17 17 C 1.38240 * 119.99645 * 0.50240 * 16 15 14 18 18 C 1.38227 * 120.00205 * 359.74956 * 17 16 15 19 19 C 1.38232 * 119.99860 * 90.00280 * 14 13 12 20 20 H 1.09005 * 109.46227 * 180.02562 * 1 2 3 21 21 H 1.08996 * 109.47271 * 299.99381 * 1 2 3 22 22 H 1.08994 * 109.46948 * 60.00069 * 1 2 3 23 23 H 0.97009 * 119.99787 * 179.97438 * 7 6 4 24 24 H 1.09001 * 109.46652 * 304.99694 * 12 2 1 25 25 H 1.08992 * 109.47514 * 184.99783 * 12 2 1 26 26 H 1.09002 * 109.47398 * 300.00496 * 13 12 2 27 27 H 1.09001 * 109.47194 * 60.00677 * 13 12 2 28 28 H 1.08001 * 120.00330 * 359.97438 * 15 14 13 29 29 H 1.08001 * 119.99843 * 180.23314 * 16 15 14 30 30 H 1.08002 * 119.99612 * 179.72381 * 17 16 15 31 31 H 1.07996 * 120.00251 * 179.97438 * 18 17 16 32 32 H 1.07998 * 120.00407 * 0.02562 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6534 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.1458 -2.2876 3.6038 10 1 3.1467 -0.1873 4.8166 11 1 1.1662 -1.5867 4.8160 12 6 2.0401 -0.7212 -1.2492 13 6 1.6353 0.0690 -2.4953 14 6 2.1372 -0.6417 -3.7258 15 6 3.3882 -0.3448 -4.2334 16 6 3.8506 -1.0001 -5.3594 17 6 3.0576 -1.9448 -5.9837 18 6 1.8046 -2.2379 -5.4791 19 6 1.3442 -1.5863 -4.3501 20 1 -0.3632 -1.0278 0.0005 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 0.7088 1.1613 3.4845 24 1 1.6055 -1.7198 -1.2951 25 1 3.1264 -0.7993 -1.2056 26 1 0.5489 0.1472 -2.5389 27 1 2.0698 1.0676 -2.4494 28 1 4.0057 0.3968 -3.7485 29 1 4.8295 -0.7708 -5.7538 30 1 3.4171 -2.4535 -6.8660 31 1 1.1849 -2.9757 -5.9671 32 1 0.3649 -1.8148 -3.9563 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006036492.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:29 Heat of formation + Delta-G solvation = -17.714545 kcal Electronic energy + Delta-G solvation = -12530.128150 eV Core-core repulsion = 10453.833322 eV Total energy + Delta-G solvation = -2076.294828 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.14370 -37.31500 -34.53785 -32.37333 -31.70166 -28.80764 -27.30008 -24.97494 -23.37550 -22.04475 -20.87445 -18.37227 -17.48332 -16.63637 -16.23508 -15.93697 -15.12599 -14.82239 -14.38684 -14.16711 -13.77949 -13.61026 -13.37762 -12.86027 -12.70369 -12.37338 -12.24022 -12.13540 -11.94520 -11.79637 -11.34700 -11.01685 -10.77517 -10.43006 -9.75737 -9.47860 -8.08148 -6.22504 0.53509 0.56251 1.39565 1.41160 1.52855 2.43462 2.95627 3.18701 3.97565 4.01563 4.23497 4.35082 4.36021 4.57105 4.71499 4.71814 4.76463 4.93278 4.99563 5.12518 5.22244 5.26408 5.32965 5.36188 5.50819 5.62262 5.65575 5.67097 5.84988 6.00069 6.17123 6.22506 6.40490 6.90007 7.45949 8.96460 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.057640 B = 0.006400 C = 0.006187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.658441 B = 4373.725230 C = 4524.550242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.036 3.964 3 H -0.004 1.004 4 C -0.534 4.534 5 H 0.049 0.951 6 C 0.010 3.990 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.269 1.269 10 H -0.279 1.279 11 H -0.279 1.279 12 C -0.083 4.083 13 C -0.076 4.076 14 C -0.088 4.088 15 C -0.137 4.137 16 C -0.124 4.124 17 C -0.135 4.135 18 C -0.123 4.123 19 C -0.135 4.135 20 H 0.024 0.976 21 H 0.050 0.950 22 H 0.035 0.965 23 H 0.260 0.740 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.121 0.879 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.649 -4.216 -14.765 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.017 3.983 3 H 0.015 0.985 4 C -0.572 4.572 5 H 0.067 0.933 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.779 3.221 9 H -0.193 1.193 10 H -0.205 1.205 11 H -0.205 1.205 12 C -0.121 4.121 13 C -0.113 4.113 14 C -0.088 4.088 15 C -0.155 4.155 16 C -0.141 4.141 17 C -0.152 4.152 18 C -0.141 4.141 19 C -0.153 4.153 20 H 0.043 0.957 21 H 0.069 0.931 22 H 0.054 0.946 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.139 0.861 29 H 0.160 0.840 30 H 0.165 0.835 31 H 0.161 0.839 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.573 -4.107 -14.632 15.414 hybrid contribution 0.159 -0.138 1.242 1.259 sum 2.732 -4.246 -13.391 14.311 Atomic orbital electron populations 1.21672 0.98330 0.98678 0.99750 1.18693 0.93133 0.94334 0.92128 0.98545 1.21631 1.30950 1.12340 0.92252 0.93289 1.25757 0.95354 0.95755 1.01943 1.70034 1.37839 1.24202 1.23781 0.85574 0.78224 0.78723 0.79551 1.19306 1.20511 1.20476 1.21405 0.98999 0.98158 0.93514 1.20643 1.01031 0.98194 0.91467 1.20129 0.95193 0.97277 0.96175 1.21274 0.95659 1.01117 0.97453 1.21437 1.00676 0.96565 0.95453 1.21468 0.94475 0.98364 1.00927 1.21440 0.96880 0.99799 0.95983 1.21270 1.00328 0.96981 0.96765 0.95686 0.93073 0.94646 0.93056 0.93736 0.94212 0.91058 0.91848 0.86076 0.83986 0.83533 0.83923 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.25 8.73 71.98 0.63 -5.62 16 2 C 0.04 1.84 2.30 -11.54 -0.03 1.81 16 3 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 4 C -0.53 -30.40 8.56 25.60 0.22 -30.18 16 5 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 6 C 0.01 0.57 5.30 84.65 0.45 1.02 16 7 N -0.92 -54.31 11.32 21.44 0.24 -54.07 16 8 Si 0.95 44.53 29.54 68.60 2.03 46.56 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 11 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 12 C -0.08 -3.56 4.60 30.59 0.14 -3.41 16 13 C -0.08 -2.71 5.10 29.85 0.15 -2.56 16 14 C -0.09 -2.75 5.13 -19.87 -0.10 -2.85 16 15 C -0.14 -3.88 9.70 22.27 0.22 -3.67 16 16 C -0.12 -2.86 10.05 22.27 0.22 -2.64 16 17 C -0.13 -2.85 10.05 22.27 0.22 -2.62 16 18 C -0.12 -2.83 10.05 22.27 0.22 -2.60 16 19 C -0.14 -3.80 9.70 22.27 0.22 -3.58 16 20 H 0.02 1.17 8.14 -2.38 -0.02 1.15 16 21 H 0.05 2.81 6.07 -2.39 -0.01 2.80 16 22 H 0.03 1.51 6.56 -2.39 -0.02 1.49 16 23 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 24 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.07 2.48 6.51 -2.39 -0.02 2.46 16 27 H 0.06 2.24 8.08 -2.39 -0.02 2.22 16 28 H 0.12 3.28 8.06 -2.91 -0.02 3.26 16 29 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 30 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 32 H 0.12 3.26 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -62.31 267.59 5.90 -56.41 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 1.07 Total: 7.99 kcal Atomic # 6 Polarization: -59.46 SS G_CDS: 2.56 Total: -56.90 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.24 Total: -54.07 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -62.31 5.90 -56.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006036492.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.698 kcal (2) G-P(sol) polarization free energy of solvation -62.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds