Wall clock time and date at job start Thu Apr 9 2020 14:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47263 * 2 1 4 4 C 1.52996 * 109.46866 * 239.99479 * 2 1 3 5 5 C 1.50709 * 109.47032 * 119.99797 * 2 1 3 6 6 C 1.38657 * 119.87337 * 359.97438 * 5 2 1 7 7 C 1.38616 * 120.49872 * 180.02562 * 6 5 2 8 8 C 1.37641 * 120.24601 * 0.02562 * 7 6 5 9 9 C 1.40695 * 119.74915 * 359.97438 * 8 7 6 10 10 C 1.41393 * 120.24694 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99672 * 155.20204 * 10 9 8 12 12 C 1.39949 * 119.99739 * 335.20295 * 10 9 8 13 13 N 1.30823 * 120.00094 * 342.29831 * 12 10 9 14 14 Si 1.86801 * 119.99670 * 162.30263 * 12 10 9 15 15 H 1.48498 * 109.47523 * 59.99711 * 14 12 10 16 16 H 1.48503 * 109.46593 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47194 * 299.99426 * 14 12 10 18 18 C 1.37591 * 119.87250 * 180.02562 * 5 2 1 19 19 H 1.09009 * 109.47123 * 300.00319 * 1 2 3 20 20 H 1.08996 * 109.47220 * 60.00479 * 1 2 3 21 21 H 1.09002 * 109.47066 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47320 * 180.02562 * 3 2 1 23 23 H 1.09009 * 109.46791 * 299.99625 * 3 2 1 24 24 H 1.08995 * 109.47325 * 59.99766 * 3 2 1 25 25 H 1.09002 * 109.47197 * 299.99820 * 4 2 1 26 26 H 1.09000 * 109.47490 * 60.00398 * 4 2 1 27 27 H 1.09002 * 109.47129 * 180.02562 * 4 2 1 28 28 H 1.07994 * 119.75166 * 359.74437 * 6 5 2 29 29 H 1.07994 * 119.87549 * 179.97438 * 7 6 5 30 30 H 1.08004 * 120.12276 * 179.97438 * 8 7 6 31 31 H 0.96995 * 120.00038 * 180.02562 * 13 12 10 32 32 H 1.08003 * 120.13296 * 359.95265 * 18 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 2.0324 -0.7104 1.2306 6 6 1.1290 -1.2359 2.1418 7 6 1.5767 -1.8913 3.2782 8 6 2.9260 -2.0268 3.5141 9 6 3.8518 -1.4976 2.5963 10 6 5.2402 -1.6314 2.8280 11 1 5.9310 -1.6057 1.9982 12 6 5.7192 -1.7969 4.1325 13 7 4.9599 -1.4884 5.1522 14 14 7.4427 -2.4584 4.4176 15 1 8.4326 -1.5503 3.7845 16 1 7.7071 -2.5381 5.8767 17 1 7.5588 -3.8121 3.8183 18 6 3.3857 -0.8342 1.4460 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 3.1300 1.4424 -0.0005 23 1 1.6767 1.9562 -0.8901 24 1 1.6767 1.9563 0.8899 25 1 1.6766 -1.7490 -1.2491 26 1 1.6767 -0.2076 -2.1392 27 1 3.1300 -0.7218 -1.2490 28 1 0.0686 -1.1297 1.9672 29 1 0.8643 -2.2963 3.9815 30 1 3.2726 -2.5375 4.4004 31 1 5.2920 -1.6028 6.0563 32 1 4.0876 -0.4241 0.7349 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033607977.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:31 Heat of formation + Delta-G solvation = -7.485140 kcal Electronic energy + Delta-G solvation = -13024.456538 eV Core-core repulsion = 10948.605290 eV Total energy + Delta-G solvation = -2075.851248 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 204.121 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.39379 -35.56417 -33.21432 -29.90232 -28.38039 -27.07536 -26.71816 -24.85976 -21.57037 -20.38999 -18.61402 -16.62222 -15.48445 -14.86416 -13.95587 -13.70380 -13.66265 -13.15179 -12.73652 -12.30401 -11.98858 -11.73577 -11.36886 -11.20151 -11.14402 -11.05556 -10.80066 -10.55525 -10.46460 -10.19837 -10.13903 -9.36593 -9.20180 -9.06511 -7.37460 -7.15794 -6.69299 -4.29210 2.85916 3.07688 3.09412 3.12001 3.28835 3.97409 4.67733 5.37040 5.43882 5.49185 5.82747 6.02099 6.04539 6.08240 6.25014 6.28646 6.37543 6.41247 6.48936 6.59297 6.67674 6.77421 6.87362 7.03309 7.13536 7.34409 7.48332 7.68744 8.00803 8.12013 8.20237 8.37194 8.71317 8.96822 9.06051 10.25806 Molecular weight = 204.12amu Principal moments of inertia in cm(-1) A = 0.049199 B = 0.009027 C = 0.008198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.982561 B = 3101.198897 C = 3414.683332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.027 4.027 3 C -0.132 4.132 4 C -0.132 4.132 5 C -0.052 4.052 6 C -0.239 4.239 7 C -0.108 4.108 8 C -0.166 4.166 9 C 0.109 3.891 10 C -0.467 4.467 11 H 0.075 0.925 12 C 0.077 3.923 13 N -0.797 5.797 14 Si 0.906 3.094 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.264 1.264 18 C -0.215 4.215 19 H 0.054 0.946 20 H 0.043 0.957 21 H 0.054 0.946 22 H 0.056 0.944 23 H 0.044 0.956 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.279 0.721 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 1.354 -5.558 6.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.027 4.027 3 C -0.190 4.190 4 C -0.189 4.189 5 C -0.052 4.052 6 C -0.258 4.258 7 C -0.127 4.127 8 C -0.186 4.186 9 C 0.107 3.893 10 C -0.497 4.497 11 H 0.093 0.907 12 C -0.141 4.141 13 N -0.423 5.423 14 Si 0.730 3.270 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.189 1.189 18 C -0.234 4.234 19 H 0.073 0.927 20 H 0.062 0.938 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.133 0.867 31 H 0.090 0.910 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.324 1.377 -5.293 6.400 hybrid contribution 0.803 -0.262 0.366 0.921 sum -2.521 1.116 -4.927 5.646 Atomic orbital electron populations 1.21873 0.95408 1.01324 1.00530 1.19403 0.94587 0.94708 0.93992 1.21828 1.01307 0.95340 1.00475 1.21828 1.01249 0.99898 0.95941 1.19177 0.93656 0.98233 0.94160 1.20371 0.96976 1.10291 0.98133 1.20679 0.95606 0.99964 0.96421 1.21308 0.91523 1.03999 1.01753 1.17582 0.93334 0.87901 0.90472 1.19504 0.92596 1.44779 0.92817 0.90694 1.25877 0.99533 0.92800 0.95845 1.69825 1.37796 1.34758 0.99891 0.86416 0.82314 0.80510 0.77723 1.19097 1.20411 1.18908 1.20760 0.93301 1.07802 1.01566 0.92676 0.93814 0.92699 0.92477 0.93737 0.92910 0.92970 0.93695 0.92524 0.89106 0.89709 0.86719 0.90988 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 7.13 37.16 0.26 -1.84 16 2 C -0.03 -0.48 0.85 -155.66 -0.13 -0.61 16 3 C -0.13 -2.20 8.28 37.15 0.31 -1.89 16 4 C -0.13 -2.14 8.28 37.16 0.31 -1.83 16 5 C -0.05 -1.16 4.76 -104.70 -0.50 -1.66 16 6 C -0.24 -5.41 8.99 -39.29 -0.35 -5.77 16 7 C -0.11 -2.62 10.02 -39.66 -0.40 -3.02 16 8 C -0.17 -4.45 8.70 -38.87 -0.34 -4.79 16 9 C 0.11 2.98 5.57 -106.82 -0.60 2.38 16 10 C -0.47 -12.67 9.05 -37.74 -0.34 -13.01 16 11 H 0.07 1.95 7.91 -52.49 -0.41 1.54 16 12 C 0.08 1.97 5.14 -17.34 -0.09 1.88 16 13 N -0.80 -21.11 10.97 55.55 0.61 -20.50 16 14 Si 0.91 19.07 29.59 -169.99 -5.03 14.04 16 15 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 16 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 17 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 18 C -0.21 -5.31 8.44 -38.87 -0.33 -5.64 16 19 H 0.05 0.87 7.50 -51.92 -0.39 0.48 16 20 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.05 0.86 7.51 -51.93 -0.39 0.47 16 22 H 0.06 0.98 7.38 -51.93 -0.38 0.60 16 23 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.95 7.38 -51.93 -0.38 0.57 16 28 H 0.09 1.84 5.86 -52.49 -0.31 1.53 16 29 H 0.08 1.84 8.06 -52.49 -0.42 1.42 16 30 H 0.11 3.16 6.18 -52.48 -0.32 2.84 16 31 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 32 H 0.09 2.12 7.08 -52.48 -0.37 1.75 16 LS Contribution 260.95 15.07 3.93 3.93 Total: -1.00 -27.50 260.95 -7.32 -34.82 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.63 Total: 3.51 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: -2.19 Total: -35.79 kcal Atomic # 7 Polarization: -21.11 SS G_CDS: 0.61 Total: -20.50 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -27.50 -7.32 -34.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033607977.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.332 kcal (2) G-P(sol) polarization free energy of solvation -27.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds