Wall clock time and date at job start Thu Apr 9 2020 14:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.50706 * 109.47260 * 210.31198 * 3 2 1 5 5 C 1.38713 * 119.72846 * 270.02390 * 4 3 2 6 6 C 1.36554 * 120.45118 * 179.75667 * 5 4 3 7 7 C 1.40714 * 119.89345 * 0.47301 * 6 5 4 8 8 C 1.41290 * 120.26574 * 179.78288 * 7 6 5 9 9 H 1.08004 * 120.00280 * 154.44986 * 8 7 6 10 10 C 1.39941 * 119.99964 * 334.46108 * 8 7 6 11 11 N 1.30842 * 119.99589 * 334.66003 * 10 8 7 12 12 Si 1.86792 * 120.00272 * 154.67024 * 10 8 7 13 13 H 1.48506 * 109.47360 * 179.97438 * 12 10 8 14 14 H 1.48500 * 109.47057 * 299.99229 * 12 10 8 15 15 H 1.48500 * 109.47390 * 59.99249 * 12 10 8 16 16 C 1.40996 * 119.46846 * 359.50793 * 7 6 5 17 17 F 1.35098 * 120.22265 * 180.27069 * 16 7 6 18 18 C 1.38010 * 119.55325 * 0.25791 * 16 7 6 19 19 H 1.08999 * 109.47183 * 90.31278 * 3 2 1 20 20 H 1.09002 * 109.47087 * 330.31352 * 3 2 1 21 21 H 1.08001 * 119.77369 * 0.02562 * 5 4 3 22 22 H 1.07996 * 120.05134 * 180.25924 * 6 5 4 23 23 H 0.96999 * 120.00548 * 354.21286 * 11 10 8 24 24 H 1.08001 * 119.96010 * 179.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1098 1.2275 0.7171 5 6 3.3381 2.3956 0.0046 6 6 3.7880 3.5172 0.6403 7 6 4.0320 3.4879 2.0258 8 6 4.5020 4.6426 2.6907 9 1 4.3069 4.7760 3.7446 10 6 5.2202 5.6135 1.9838 11 7 5.8801 5.2818 0.9037 12 14 5.2371 7.3829 2.5821 13 1 6.0646 8.2077 1.6653 14 1 3.8492 7.9105 2.6064 15 1 5.8114 7.4373 3.9505 16 6 3.7981 2.2987 2.7463 17 9 4.0221 2.2551 4.0779 18 6 3.3387 1.1796 2.0821 19 1 2.9713 0.0064 -1.0276 20 1 2.9717 -0.8920 0.5090 21 1 3.1546 2.4193 -1.0594 22 1 3.9596 4.4244 0.0800 23 1 5.9413 4.3504 0.6395 24 1 3.1578 0.2651 2.6274 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368200.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:39 Heat of formation + Delta-G solvation = -37.623813 kcal Electronic energy + Delta-G solvation = -12219.453121 eV Core-core repulsion = 9817.575651 eV Total energy + Delta-G solvation = -2401.877470 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.27555 -39.78159 -37.59537 -36.08737 -32.93671 -31.10589 -29.61964 -26.15807 -23.18351 -22.52915 -19.98810 -18.57978 -17.35249 -17.15032 -16.59473 -16.10474 -15.68222 -15.16376 -14.98890 -14.66721 -14.33240 -13.85549 -13.64891 -13.31999 -12.96345 -12.48577 -12.39075 -12.19569 -11.96579 -11.79060 -11.38912 -10.94779 -9.64954 -9.53921 -9.19016 -6.55404 0.65313 0.74875 1.49603 1.57694 1.79207 1.91288 1.91609 2.28552 2.53248 3.20380 3.55174 3.88596 4.16814 4.24069 4.57538 4.65676 4.88448 4.91831 5.10074 5.34872 5.50425 5.69199 5.74204 5.90335 6.02595 6.23935 6.62534 6.71367 6.77511 7.95092 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.046018 B = 0.009112 C = 0.008322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.311397 B = 3072.197948 C = 3363.960191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C 0.241 3.759 3 C 0.045 3.955 4 C -0.195 4.195 5 C -0.069 4.069 6 C -0.218 4.218 7 C 0.046 3.954 8 C -0.549 4.549 9 H 0.064 0.936 10 C 0.009 3.991 11 N -0.801 5.801 12 Si 1.114 2.886 13 H -0.264 1.264 14 H -0.265 1.265 15 H -0.262 1.262 16 C -0.073 4.073 17 F -0.173 7.173 18 C -0.091 4.091 19 H 0.147 0.853 20 H 0.143 0.857 21 H 0.136 0.864 22 H 0.100 0.900 23 H 0.289 0.711 24 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.236 -4.533 -2.714 5.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.075 4.075 3 C 0.006 3.994 4 C -0.198 4.198 5 C -0.087 4.087 6 C -0.238 4.238 7 C 0.043 3.957 8 C -0.576 4.576 9 H 0.082 0.918 10 C -0.209 4.209 11 N -0.423 5.423 12 Si 0.931 3.069 13 H -0.188 1.188 14 H -0.190 1.190 15 H -0.187 1.187 16 C -0.093 4.093 17 F -0.152 7.152 18 C -0.109 4.109 19 H 0.164 0.836 20 H 0.161 0.839 21 H 0.154 0.846 22 H 0.118 0.882 23 H 0.102 0.898 24 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.873 -3.065 -3.098 4.444 hybrid contribution -0.066 -1.367 0.962 1.673 sum -0.938 -4.432 -2.136 5.008 Atomic orbital electron populations 1.81160 1.15095 1.11302 1.11542 1.30034 0.95893 0.90716 0.90808 1.18197 0.78668 0.97554 1.04983 1.18858 1.12449 0.96231 0.92261 1.20727 0.96270 0.91937 0.99787 1.20775 1.09890 0.99229 0.93881 1.18080 0.92341 0.91645 0.93648 1.20720 1.33226 1.04837 0.98831 0.91753 1.28381 0.90048 1.09990 0.92473 1.70576 1.27400 1.23493 1.20869 0.83028 0.78534 0.68345 0.76987 1.18760 1.18965 1.18651 1.18150 1.17127 0.96463 0.77546 1.91241 1.94062 1.97181 1.32707 1.20837 0.98705 0.96339 0.95068 0.83560 0.83938 0.84638 0.88196 0.89832 0.84583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -17.77 18.54 20.00 0.37 -17.40 14 2 C 0.24 6.81 15.41 89.44 1.38 8.18 14 3 C 0.05 0.95 5.82 28.04 0.16 1.11 14 4 C -0.20 -6.48 5.11 -19.69 -0.10 -6.58 14 5 C -0.07 -2.57 9.61 21.99 0.21 -2.36 14 6 C -0.22 -10.23 7.90 22.48 0.18 -10.06 14 7 C 0.05 2.41 5.30 -21.25 -0.11 2.30 14 8 C -0.55 -29.75 8.71 23.43 0.20 -29.55 14 9 H 0.06 3.57 7.81 -2.91 -0.02 3.55 14 10 C 0.01 0.45 4.94 85.25 0.42 0.87 14 11 N -0.80 -41.09 12.32 21.83 0.27 -40.82 14 12 Si 1.11 42.37 30.00 68.60 2.06 44.43 14 13 H -0.26 -9.58 7.11 99.48 0.71 -8.88 14 14 H -0.26 -9.64 7.11 99.48 0.71 -8.93 14 15 H -0.26 -9.37 7.11 99.48 0.71 -8.66 14 16 C -0.07 -3.56 7.31 22.89 0.17 -3.39 14 17 F -0.17 -8.72 16.73 44.97 0.75 -7.96 14 18 C -0.09 -3.50 9.66 22.28 0.22 -3.29 14 19 H 0.15 2.07 8.08 -2.39 -0.02 2.05 14 20 H 0.14 2.07 8.08 -2.39 -0.02 2.05 14 21 H 0.14 4.07 8.06 -2.91 -0.02 4.05 14 22 H 0.10 4.91 6.49 -2.91 -0.02 4.89 14 23 H 0.29 15.14 6.68 -92.71 -0.62 14.52 14 24 H 0.14 4.37 8.06 -2.91 -0.02 4.35 14 Total: -1.00 -63.08 231.94 7.55 -55.53 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 1.37 Total: 8.98 kcal Atomic # 6 Polarization: -45.48 SS G_CDS: 2.73 Total: -42.76 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.64 Total: -58.22 kcal Atomic # 9 Polarization: -8.72 SS G_CDS: 0.75 Total: -7.96 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.06 Total: 44.43 kcal Total: -63.08 7.55 -55.53 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368200.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.908 kcal (2) G-P(sol) polarization free energy of solvation -63.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds