Wall clock time and date at job start Thu Apr 9 2020 14:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86803 * 119.99964 * 2 1 4 4 H 1.48493 * 109.47385 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47375 * 300.00256 * 3 2 1 6 6 H 1.48507 * 109.46890 * 60.00334 * 3 2 1 7 7 C 1.39892 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99703 * 163.21736 * 7 2 1 9 9 C 1.40901 * 119.99894 * 343.21221 * 7 2 1 10 10 C 1.40679 * 120.27146 * 334.34880 * 9 7 2 11 11 C 1.37808 * 120.39834 * 180.02562 * 10 9 7 12 12 C 1.38629 * 120.64427 * 0.02562 * 11 10 9 13 13 F 1.35090 * 119.93553 * 179.97438 * 12 11 10 14 14 C 1.40138 * 120.13358 * 0.02612 * 12 11 10 15 15 C 1.46515 * 133.87141 * 179.97438 * 14 12 11 16 16 C 1.34340 * 106.83128 * 180.02562 * 15 14 12 17 17 N 1.36708 * 109.78132 * 359.97438 * 16 15 14 18 18 H 0.96995 * 125.00291 * 180.26748 * 17 16 15 19 19 C 1.36973 * 110.00052 * 359.97438 * 17 16 15 20 20 H 0.96995 * 120.00051 * 0.02562 * 1 2 3 21 21 H 1.08001 * 119.79812 * 359.97438 * 10 9 7 22 22 H 1.07996 * 119.67879 * 180.02562 * 11 10 9 23 23 H 1.08004 * 126.58869 * 0.02562 * 15 14 12 24 24 H 1.08000 * 125.10808 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.7030 1.3465 -0.0006 5 1 1.8843 2.3965 -1.2124 6 1 1.8843 2.3964 1.2126 7 6 2.0085 -1.2115 -0.0005 8 1 3.0540 -1.2312 -0.2706 9 6 1.3491 -2.4059 0.3514 10 6 0.2204 -2.3721 1.1905 11 6 -0.4263 -3.5387 1.5367 12 6 0.0235 -4.7625 1.0657 13 9 -0.6210 -5.8973 1.4147 14 6 1.1461 -4.8249 0.2292 15 6 1.8649 -5.9210 -0.4254 16 6 2.8785 -5.3667 -1.1111 17 7 2.8615 -4.0097 -0.9458 18 1 3.4929 -3.3924 -1.3470 19 6 1.8175 -3.6496 -0.1355 20 1 -0.4850 0.8400 -0.0004 21 1 -0.1409 -1.4262 1.5662 22 1 -1.2919 -3.4992 2.1813 23 1 1.6259 -6.9726 -0.3679 24 1 3.5981 -5.9112 -1.7045 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044370937.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:49 Heat of formation + Delta-G solvation = -19.669098 kcal Electronic energy + Delta-G solvation = -12561.017999 eV Core-core repulsion = 10159.919104 eV Total energy + Delta-G solvation = -2401.098895 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.19580 -41.61622 -37.53722 -35.22903 -32.29114 -30.41824 -29.19977 -26.82350 -23.14000 -22.54314 -21.34044 -19.23216 -18.83555 -17.34535 -16.69268 -16.14844 -16.09151 -15.70223 -15.08814 -14.76734 -13.97057 -13.92985 -13.65735 -13.24531 -12.86787 -12.66634 -12.35120 -11.87812 -11.72361 -11.62101 -11.04801 -10.07981 -9.00618 -8.66997 -8.44221 -6.24915 0.55170 1.11868 1.39634 1.43900 1.55252 2.04372 2.18909 2.62638 2.70146 3.58850 4.02946 4.15383 4.47423 4.58224 4.67382 4.98043 5.04379 5.23416 5.36435 5.50093 5.81305 5.94750 5.96230 6.20589 6.30168 6.62895 6.77534 6.93304 7.06487 8.28867 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.041186 B = 0.011617 C = 0.009286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.675238 B = 2409.682010 C = 3014.587718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.035 3.965 3 Si 0.986 3.014 4 H -0.254 1.254 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.481 4.481 8 H 0.085 0.915 9 C 0.091 3.909 10 C -0.198 4.198 11 C -0.128 4.128 12 C -0.047 4.047 13 F -0.171 7.171 14 C -0.133 4.133 15 C -0.253 4.253 16 C 0.063 3.937 17 N -0.573 5.573 18 H 0.421 0.579 19 C 0.018 3.982 20 H 0.291 0.709 21 H 0.117 0.883 22 H 0.115 0.885 23 H 0.149 0.851 24 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.866 -1.539 -2.397 6.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.177 1.177 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.510 4.510 8 H 0.103 0.897 9 C 0.087 3.913 10 C -0.220 4.220 11 C -0.148 4.148 12 C -0.067 4.067 13 F -0.150 7.150 14 C -0.138 4.138 15 C -0.279 4.279 16 C -0.066 4.066 17 N -0.175 5.175 18 H 0.259 0.741 19 C -0.089 4.089 20 H 0.102 0.898 21 H 0.135 0.865 22 H 0.133 0.867 23 H 0.167 0.833 24 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 5.733 -1.345 -2.463 6.383 hybrid contribution -0.113 0.714 0.080 0.727 sum 5.620 -0.631 -2.383 6.137 Atomic orbital electron populations 1.69917 1.09168 1.30859 1.34207 1.26779 0.95461 1.04593 0.91271 0.85086 0.79459 0.75924 0.78831 1.17734 1.19206 1.19157 1.19651 0.97970 0.91815 1.41554 0.89704 1.17145 0.93120 0.90021 0.90971 1.20645 1.00936 0.96271 1.04122 1.20671 1.00720 0.91392 1.01979 1.16905 0.98414 0.81448 1.09975 1.91228 1.81563 1.50361 1.91885 1.19241 0.97300 0.95251 1.02022 1.21739 1.00759 0.97767 1.07654 1.22346 1.00523 0.82097 1.01630 1.41424 1.26063 1.07543 1.42471 0.74069 1.18419 0.94629 0.94340 1.01560 0.89820 0.86527 0.86675 0.83330 0.76682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.20 10.96 21.82 0.24 -40.96 14 2 C 0.04 1.67 5.15 85.23 0.44 2.11 14 3 Si 0.99 35.70 29.59 68.60 2.03 37.73 14 4 H -0.25 -8.82 7.11 99.48 0.71 -8.11 14 5 H -0.27 -9.32 7.11 99.48 0.71 -8.62 14 6 H -0.27 -9.46 7.11 99.48 0.71 -8.75 14 7 C -0.48 -24.15 9.03 23.32 0.21 -23.94 14 8 H 0.08 3.93 7.90 -2.91 -0.02 3.90 14 9 C 0.09 4.86 5.57 -21.22 -0.12 4.74 14 10 C -0.20 -10.68 8.66 22.76 0.20 -10.48 14 11 C -0.13 -6.57 9.98 22.26 0.22 -6.34 14 12 C -0.05 -2.41 7.36 22.82 0.17 -2.24 14 13 F -0.17 -8.39 17.27 44.97 0.78 -7.61 14 14 C -0.13 -6.53 6.35 -20.19 -0.13 -6.66 14 15 C -0.25 -9.97 11.10 23.54 0.26 -9.71 14 16 C 0.06 2.01 11.83 83.04 0.98 2.99 14 17 N -0.57 -21.64 6.03 -186.63 -1.12 -22.77 14 18 H 0.42 13.37 8.96 -92.71 -0.83 12.54 14 19 C 0.02 0.87 7.00 39.63 0.28 1.14 14 20 H 0.29 13.18 8.30 -92.71 -0.77 12.41 14 21 H 0.12 6.41 6.18 -2.91 -0.02 6.39 14 22 H 0.12 5.33 8.06 -2.91 -0.02 5.30 14 23 H 0.15 5.14 8.06 -2.91 -0.02 5.12 14 24 H 0.22 4.20 8.06 -2.91 -0.02 4.17 14 Total: -1.00 -62.48 222.70 4.84 -57.64 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.41 Total: 24.36 kcal Atomic # 6 Polarization: -50.90 SS G_CDS: 2.51 Total: -48.39 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: -0.89 Total: -63.73 kcal Atomic # 9 Polarization: -8.39 SS G_CDS: 0.78 Total: -7.61 kcal Atomic # 14 Polarization: 35.70 SS G_CDS: 2.03 Total: 37.73 kcal Total: -62.48 4.84 -57.64 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044370937.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.970 kcal (2) G-P(sol) polarization free energy of solvation -62.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds