Wall clock time and date at job start Thu Apr 9 2020 14:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86797 * 119.99738 * 2 1 4 4 H 1.48499 * 109.47185 * 269.99918 * 3 2 1 5 5 H 1.48502 * 109.47404 * 29.99993 * 3 2 1 6 6 H 1.48504 * 109.47211 * 150.00230 * 3 2 1 7 7 C 1.39934 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00116 * 163.19600 * 7 2 1 9 9 C 1.40970 * 120.00353 * 343.20353 * 7 2 1 10 10 C 1.40614 * 120.27613 * 334.40356 * 9 7 2 11 11 C 1.38096 * 120.34623 * 179.97438 * 10 9 7 12 12 F 1.35104 * 119.68635 * 180.02562 * 11 10 9 13 13 C 1.38504 * 120.63452 * 359.97438 * 11 10 9 14 14 C 1.39881 * 120.16679 * 0.29271 * 13 11 10 15 15 C 1.46551 * 133.85019 * 180.36105 * 14 13 11 16 16 C 1.34327 * 106.84031 * 179.53359 * 15 14 13 17 17 N 1.36712 * 109.81501 * 359.78442 * 16 15 14 18 18 H 0.96994 * 124.99875 * 180.02562 * 17 16 15 19 19 C 1.37024 * 109.99837 * 359.97438 * 17 16 15 20 20 H 0.96999 * 120.00412 * 359.97438 * 1 2 3 21 21 H 1.07995 * 119.82593 * 0.02562 * 10 9 7 22 22 H 1.07993 * 119.91716 * 180.02562 * 13 11 10 23 23 H 1.07999 * 126.57962 * 359.27726 * 15 14 13 24 24 H 1.08003 * 125.09001 * 179.78149 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4900 2.0464 -1.4001 5 1 1.4399 2.6527 0.7000 6 1 3.5401 1.4402 0.7000 7 6 2.0083 -1.2118 0.0005 8 1 3.0537 -1.2319 -0.2699 9 6 1.3486 -2.4065 0.3539 10 6 0.2199 -2.3721 1.1918 11 6 -0.4277 -3.5415 1.5384 12 9 -1.5112 -3.4928 2.3438 13 6 0.0223 -4.7637 1.0673 14 6 1.1462 -4.8264 0.2368 15 6 1.8616 -5.9225 -0.4224 16 6 2.8748 -5.3688 -1.1087 17 7 2.8592 -4.0117 -0.9439 18 1 3.4929 -3.3954 -1.3431 19 6 1.8158 -3.6502 -0.1326 20 1 -0.4851 0.8400 0.0004 21 1 -0.1429 -1.4260 1.5655 22 1 -0.4932 -5.6710 1.3453 23 1 1.6227 -6.9741 -0.3638 24 1 3.5941 -5.9140 -1.7019 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044370942.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:51 Heat of formation + Delta-G solvation = -20.771755 kcal Electronic energy + Delta-G solvation = -12551.710578 eV Core-core repulsion = 10150.563868 eV Total energy + Delta-G solvation = -2401.146710 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.49425 -41.59567 -37.41281 -35.28763 -32.50011 -29.98657 -29.16493 -27.23270 -23.25196 -22.31062 -21.30761 -19.25217 -18.59339 -17.61413 -16.78551 -16.47192 -16.19432 -15.67722 -14.86285 -14.69790 -13.95513 -13.89249 -13.57211 -13.21833 -13.07182 -12.70711 -12.44637 -12.16397 -11.69586 -11.36414 -11.09826 -10.16573 -8.86042 -8.62990 -8.49029 -6.35976 0.59735 1.06245 1.36979 1.42942 1.53220 2.09097 2.17218 2.67907 2.72101 3.56067 3.80427 4.36387 4.42769 4.64743 4.79942 4.98668 5.08440 5.19532 5.40403 5.49009 5.72768 5.88414 5.97793 6.25155 6.31862 6.59909 6.73895 6.89459 7.09687 8.24978 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.030659 B = 0.013448 C = 0.009598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.058738 B = 2081.534277 C = 2916.556366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.033 3.967 3 Si 0.989 3.011 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.483 4.483 8 H 0.090 0.910 9 C 0.118 3.882 10 C -0.259 4.259 11 C 0.091 3.909 12 F -0.169 7.169 13 C -0.258 4.258 14 C -0.085 4.085 15 C -0.251 4.251 16 C 0.060 3.940 17 N -0.575 5.575 18 H 0.419 0.581 19 C -0.010 4.010 20 H 0.291 0.709 21 H 0.110 0.890 22 H 0.117 0.883 23 H 0.158 0.842 24 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.381 -2.964 -2.946 7.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.183 4.183 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.512 4.512 8 H 0.108 0.892 9 C 0.114 3.886 10 C -0.282 4.282 11 C 0.072 3.928 12 F -0.148 7.148 13 C -0.279 4.279 14 C -0.090 4.090 15 C -0.276 4.276 16 C -0.070 4.070 17 N -0.176 5.176 18 H 0.256 0.744 19 C -0.116 4.116 20 H 0.102 0.898 21 H 0.128 0.872 22 H 0.135 0.865 23 H 0.176 0.824 24 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 6.218 -2.722 -2.992 7.418 hybrid contribution -0.236 1.059 0.210 1.105 sum 5.982 -1.663 -2.782 6.803 Atomic orbital electron populations 1.69920 1.09437 1.31004 1.33744 1.26878 0.95429 1.04934 0.91094 0.85106 0.79027 0.75333 0.79698 1.18222 1.19517 1.17807 1.19687 0.98136 0.91781 1.41559 0.89234 1.16777 0.91678 0.90512 0.89637 1.20671 1.03601 0.95646 1.08236 1.17621 0.85626 0.95418 0.94169 1.91295 1.53794 1.97618 1.72094 1.19802 1.02949 0.94876 1.10314 1.19111 0.96251 0.93952 0.99684 1.21823 1.00576 0.97969 1.07273 1.22397 1.00754 0.81991 1.01815 1.41445 1.25964 1.07655 1.42509 0.74393 1.18679 0.95542 0.94969 1.02455 0.89827 0.87207 0.86539 0.82446 0.76892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.85 10.96 21.83 0.24 -42.61 14 2 C 0.03 1.62 5.15 85.25 0.44 2.06 14 3 Si 0.99 36.44 29.59 68.60 2.03 38.47 14 4 H -0.26 -8.99 7.11 99.48 0.71 -8.28 14 5 H -0.27 -9.75 7.11 99.48 0.71 -9.04 14 6 H -0.25 -9.07 7.11 99.48 0.71 -8.37 14 7 C -0.48 -24.72 9.04 23.35 0.21 -24.51 14 8 H 0.09 4.16 7.90 -2.91 -0.02 4.14 14 9 C 0.12 6.40 5.57 -21.23 -0.12 6.28 14 10 C -0.26 -14.71 8.64 22.82 0.20 -14.51 14 11 C 0.09 4.91 7.27 22.30 0.16 5.07 14 12 F -0.17 -8.70 17.25 44.97 0.78 -7.92 14 13 C -0.26 -12.83 10.08 22.73 0.23 -12.60 14 14 C -0.08 -4.00 6.37 -20.21 -0.13 -4.12 14 15 C -0.25 -9.09 11.10 23.55 0.26 -8.83 14 16 C 0.06 1.81 11.82 83.04 0.98 2.79 14 17 N -0.57 -21.31 6.03 -186.56 -1.12 -22.44 14 18 H 0.42 13.18 8.96 -92.71 -0.83 12.35 14 19 C -0.01 -0.47 7.00 39.63 0.28 -0.19 14 20 H 0.29 13.79 8.30 -92.71 -0.77 13.02 14 21 H 0.11 6.52 6.17 -2.91 -0.02 6.50 14 22 H 0.12 5.20 8.06 -2.91 -0.02 5.17 14 23 H 0.16 4.70 8.06 -2.91 -0.02 4.67 14 24 H 0.21 3.88 8.06 -2.91 -0.02 3.85 14 Total: -1.00 -63.88 222.69 4.84 -59.04 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 0.41 Total: 24.02 kcal Atomic # 6 Polarization: -51.07 SS G_CDS: 2.51 Total: -48.56 kcal Atomic # 7 Polarization: -64.16 SS G_CDS: -0.89 Total: -65.05 kcal Atomic # 9 Polarization: -8.70 SS G_CDS: 0.78 Total: -7.92 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 2.03 Total: 38.47 kcal Total: -63.88 4.84 -59.04 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044370942.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.270 kcal (2) G-P(sol) polarization free energy of solvation -63.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds