Wall clock time and date at job start Thu Apr 9 2020 14:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37912 * 120.08903 * 2 1 4 4 C 1.38382 * 120.16883 * 179.97438 * 3 2 1 5 5 C 1.38420 * 120.35175 * 0.02562 * 4 3 2 6 6 C 1.37865 * 120.17474 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.08701 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47157 * 101.10588 * 7 6 5 9 9 H 1.07993 * 119.99841 * 359.97438 * 8 7 6 10 10 C 1.37870 * 119.99803 * 179.72177 * 8 7 6 11 11 N 1.31512 * 119.99988 * 180.26845 * 10 8 7 12 12 Si 1.86807 * 120.00116 * 0.27543 * 10 8 7 13 13 H 1.48495 * 109.47206 * 89.99753 * 12 10 8 14 14 H 1.48507 * 109.47100 * 209.99832 * 12 10 8 15 15 H 1.48495 * 109.46976 * 329.99702 * 12 10 8 16 16 C 1.39839 * 120.08828 * 180.24955 * 2 1 3 17 17 C 1.47167 * 120.16756 * 0.02611 * 16 2 1 18 18 O 1.21255 * 119.99547 * 185.62949 * 17 16 2 19 19 H 1.09005 * 109.46931 * 89.99920 * 1 2 3 20 20 H 1.08999 * 109.47361 * 209.99974 * 1 2 3 21 21 H 1.08999 * 109.46918 * 330.00478 * 1 2 3 22 22 H 1.07996 * 119.91045 * 359.95032 * 3 2 1 23 23 H 1.08005 * 119.81787 * 179.97438 * 4 3 2 24 24 H 1.08003 * 119.91175 * 179.97438 * 5 4 3 25 25 H 1.09002 * 109.47440 * 341.10140 * 7 6 5 26 26 H 1.09004 * 109.46676 * 221.09919 * 7 6 5 27 27 H 0.97009 * 120.00202 * 179.97438 * 11 10 8 28 28 H 1.07998 * 120.00450 * 5.63214 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1933 0.0000 4 6 3.5822 1.1952 0.0005 5 6 4.2833 0.0017 0.0005 6 6 3.6067 -1.1995 0.0005 7 6 4.3720 -2.4977 0.0011 8 6 4.3908 -3.0691 1.3955 9 1 3.8982 -2.5445 2.2007 10 6 5.0323 -4.2643 1.6421 11 7 5.0442 -4.7656 2.8578 12 14 5.8849 -5.1715 0.2493 13 1 7.2960 -4.7190 0.1544 14 1 5.8502 -6.6321 0.5155 15 1 5.1861 -4.8846 -1.0292 16 6 2.2080 -1.2100 -0.0053 17 6 1.4779 -2.4877 -0.0114 18 8 2.0845 -3.5330 0.0870 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5138 22 1 1.6584 2.1286 -0.0008 23 1 4.1179 2.1330 0.0001 24 1 5.3633 0.0115 0.0005 25 1 5.3942 -2.3171 -0.3314 26 1 3.8895 -3.2041 -0.6745 27 1 5.4953 -5.6068 3.0313 28 1 0.4019 -2.4944 -0.1037 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306937367.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:39 Heat of formation + Delta-G solvation = -11.884036 kcal Electronic energy + Delta-G solvation = -12789.275242 eV Core-core repulsion = 10577.400149 eV Total energy + Delta-G solvation = -2211.875093 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 204.089 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.50514 -37.32262 -33.71592 -32.32466 -31.24312 -28.06169 -26.61622 -24.16858 -22.41335 -20.19354 -19.66158 -16.69073 -16.47425 -15.46223 -14.73619 -14.14917 -13.90003 -13.69801 -13.22684 -12.90394 -12.69614 -12.30367 -12.09152 -11.72009 -11.45003 -11.23539 -10.93099 -10.45607 -10.00009 -9.93391 -9.28907 -8.58943 -8.39565 -8.28114 -7.94246 -5.93169 -3.87582 1.30534 1.92804 3.18471 3.38516 3.45590 3.51895 4.35761 4.56172 4.87387 5.08060 5.18263 5.40060 5.44431 5.53047 5.70118 5.84757 5.90016 6.03504 6.19656 6.37771 6.53973 6.84862 6.86620 6.93206 7.13018 7.46788 7.55476 7.85242 8.31456 8.60474 9.08379 9.68776 11.20567 Molecular weight = 204.09amu Principal moments of inertia in cm(-1) A = 0.042304 B = 0.011042 C = 0.009866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.712292 B = 2535.137930 C = 2837.247237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.046 4.046 3 C -0.162 4.162 4 C -0.090 4.090 5 C -0.146 4.146 6 C 0.027 3.973 7 C 0.008 3.992 8 C -0.482 4.482 9 H 0.067 0.933 10 C 0.071 3.929 11 N -0.906 5.906 12 Si 0.878 3.122 13 H -0.280 1.280 14 H -0.288 1.288 15 H -0.265 1.265 16 C -0.189 4.189 17 C 0.349 3.651 18 O -0.402 6.402 19 H 0.071 0.929 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.116 0.884 23 H 0.116 0.884 24 H 0.122 0.878 25 H 0.015 0.985 26 H 0.052 0.948 27 H 0.261 0.739 28 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.202 10.422 -7.498 14.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.046 4.046 3 C -0.180 4.180 4 C -0.108 4.108 5 C -0.164 4.164 6 C 0.027 3.973 7 C -0.029 4.029 8 C -0.520 4.520 9 H 0.085 0.915 10 C -0.129 4.129 11 N -0.546 5.546 12 Si 0.706 3.294 13 H -0.206 1.206 14 H -0.214 1.214 15 H -0.190 1.190 16 C -0.190 4.190 17 C 0.204 3.796 18 O -0.271 6.271 19 H 0.090 0.910 20 H 0.088 0.912 21 H 0.085 0.915 22 H 0.134 0.866 23 H 0.134 0.866 24 H 0.140 0.860 25 H 0.034 0.966 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.808 9.677 -7.337 13.922 hybrid contribution 0.482 -0.279 -0.487 0.740 sum -6.326 9.398 -7.824 13.768 Atomic orbital electron populations 1.20859 0.91527 1.02911 1.02260 1.20014 0.95439 0.92509 0.96640 1.20747 0.94218 0.96930 1.06084 1.21232 0.94221 0.97764 0.97613 1.21095 1.00141 0.91846 1.03354 1.20639 0.92514 0.96750 0.87421 1.19067 0.93789 0.90248 0.99782 1.20610 1.33846 1.06064 0.91458 0.91482 1.24869 0.96092 0.96703 0.95256 1.69895 1.44511 1.20162 1.19994 0.86793 0.79745 0.79115 0.83734 1.20570 1.21418 1.18976 1.20630 0.94460 0.95185 1.08709 1.23768 0.93679 0.87659 0.74469 1.90688 1.71700 1.34372 1.30380 0.91046 0.91189 0.91507 0.86581 0.86568 0.85996 0.96639 0.93024 0.92875 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 9.48 36.00 0.34 -0.99 15 2 C -0.05 -0.71 5.92 -104.14 -0.62 -1.32 15 3 C -0.16 -2.35 9.69 -39.65 -0.38 -2.73 15 4 C -0.09 -1.39 10.04 -39.46 -0.40 -1.78 15 5 C -0.15 -2.73 9.65 -39.65 -0.38 -3.12 15 6 C 0.03 0.59 5.12 -104.15 -0.53 0.06 15 7 C 0.01 0.20 3.47 -29.03 -0.10 0.10 15 8 C -0.48 -14.31 8.08 -34.44 -0.28 -14.58 15 9 H 0.07 2.18 7.98 -52.49 -0.42 1.76 15 10 C 0.07 2.17 5.47 -17.82 -0.10 2.07 15 11 N -0.91 -29.02 13.96 55.43 0.77 -28.25 15 12 Si 0.88 22.90 27.47 -169.99 -4.67 18.24 15 13 H -0.28 -7.03 7.11 56.52 0.40 -6.63 15 14 H -0.29 -7.45 7.11 56.52 0.40 -7.05 15 15 H -0.27 -6.75 6.54 56.52 0.37 -6.38 15 16 C -0.19 -3.65 5.86 -105.06 -0.62 -4.26 15 17 C 0.35 6.71 10.76 34.36 0.37 7.08 15 18 O -0.40 -9.80 13.06 5.58 0.07 -9.73 15 19 H 0.07 0.68 8.14 -51.93 -0.42 0.26 15 20 H 0.07 0.76 6.42 -51.93 -0.33 0.42 15 21 H 0.07 0.64 8.09 -51.93 -0.42 0.22 15 22 H 0.12 1.32 8.06 -52.49 -0.42 0.90 15 23 H 0.12 1.42 8.06 -52.48 -0.42 1.00 15 24 H 0.12 2.14 8.03 -52.48 -0.42 1.72 15 25 H 0.02 0.38 7.42 -51.93 -0.39 -0.01 15 26 H 0.05 1.37 5.21 -51.93 -0.27 1.10 15 27 H 0.26 7.85 8.31 -40.82 -0.34 7.51 15 28 H 0.08 1.19 6.47 -52.49 -0.34 0.85 15 LS Contribution 240.96 15.07 3.63 3.63 Total: -1.00 -34.02 240.96 -5.91 -39.93 By element: Atomic # 1 Polarization: -1.31 SS G_CDS: -3.02 Total: -4.33 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -2.69 Total: -19.49 kcal Atomic # 7 Polarization: -29.02 SS G_CDS: 0.77 Total: -28.25 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.07 Total: -9.73 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.67 Total: 18.24 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -34.02 -5.91 -39.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306937367.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.051 kcal (2) G-P(sol) polarization free energy of solvation -34.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds