Wall clock time and date at job start Thu Apr 9 2020 14:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37912 * 120.08903 * 2 1 4 4 C 1.38382 * 120.16883 * 179.97438 * 3 2 1 5 5 C 1.38420 * 120.35175 * 0.02562 * 4 3 2 6 6 C 1.37865 * 120.17474 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.08701 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47157 * 101.10588 * 7 6 5 9 9 H 1.07993 * 119.99841 * 359.97438 * 8 7 6 10 10 C 1.37870 * 119.99803 * 179.72177 * 8 7 6 11 11 N 1.31512 * 119.99988 * 180.26845 * 10 8 7 12 12 Si 1.86807 * 120.00116 * 0.27543 * 10 8 7 13 13 H 1.48495 * 109.47206 * 89.99753 * 12 10 8 14 14 H 1.48507 * 109.47100 * 209.99832 * 12 10 8 15 15 H 1.48495 * 109.46976 * 329.99702 * 12 10 8 16 16 C 1.39839 * 120.08828 * 180.24955 * 2 1 3 17 17 C 1.47167 * 120.16756 * 0.02611 * 16 2 1 18 18 O 1.21255 * 119.99547 * 185.62949 * 17 16 2 19 19 H 1.09005 * 109.46931 * 89.99920 * 1 2 3 20 20 H 1.08999 * 109.47361 * 209.99974 * 1 2 3 21 21 H 1.08999 * 109.46918 * 330.00478 * 1 2 3 22 22 H 1.07996 * 119.91045 * 359.95032 * 3 2 1 23 23 H 1.08005 * 119.81787 * 179.97438 * 4 3 2 24 24 H 1.08003 * 119.91175 * 179.97438 * 5 4 3 25 25 H 1.09002 * 109.47440 * 341.10140 * 7 6 5 26 26 H 1.09004 * 109.46676 * 221.09919 * 7 6 5 27 27 H 0.97009 * 120.00202 * 179.97438 * 11 10 8 28 28 H 1.07998 * 120.00450 * 5.63214 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1933 0.0000 4 6 3.5822 1.1952 0.0005 5 6 4.2833 0.0017 0.0005 6 6 3.6067 -1.1995 0.0005 7 6 4.3720 -2.4977 0.0011 8 6 4.3908 -3.0691 1.3955 9 1 3.8982 -2.5445 2.2007 10 6 5.0323 -4.2643 1.6421 11 7 5.0442 -4.7656 2.8578 12 14 5.8849 -5.1715 0.2493 13 1 7.2960 -4.7190 0.1544 14 1 5.8502 -6.6321 0.5155 15 1 5.1861 -4.8846 -1.0292 16 6 2.2080 -1.2100 -0.0053 17 6 1.4779 -2.4877 -0.0114 18 8 2.0845 -3.5330 0.0870 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5138 22 1 1.6584 2.1286 -0.0008 23 1 4.1179 2.1330 0.0001 24 1 5.3633 0.0115 0.0005 25 1 5.3942 -2.3171 -0.3314 26 1 3.8895 -3.2041 -0.6745 27 1 5.4953 -5.6068 3.0313 28 1 0.4019 -2.4944 -0.1037 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306937367.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:03:39 Heat of formation + Delta-G solvation = -34.476778 kcal Electronic energy + Delta-G solvation = -12790.254937 eV Core-core repulsion = 10577.400149 eV Total energy + Delta-G solvation = -2212.854788 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 204.089 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.93905 -38.84040 -35.53997 -33.98620 -32.86776 -29.83393 -27.79041 -25.77984 -24.21867 -21.54913 -21.18697 -18.99029 -17.86663 -16.89896 -16.40341 -15.91343 -15.40044 -15.11038 -14.90228 -14.41662 -14.11651 -13.90663 -13.64760 -13.21714 -12.95392 -12.69388 -12.37105 -12.28167 -11.92448 -11.69061 -11.50584 -10.75093 -10.12144 -9.63014 -9.36015 -8.27074 -6.25491 -0.06963 0.58952 1.28522 1.33246 1.45349 1.76083 2.36396 2.98999 3.10260 3.51999 3.95471 4.04908 4.16973 4.41545 4.53358 4.70335 4.82865 4.92473 4.94574 5.06492 5.18105 5.20484 5.38240 5.57975 5.60534 5.62413 5.92744 6.14444 6.26382 6.71742 6.85952 7.34286 8.90612 Molecular weight = 204.09amu Principal moments of inertia in cm(-1) A = 0.042304 B = 0.011042 C = 0.009866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.712292 B = 2535.137930 C = 2837.247237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.035 4.035 3 C -0.154 4.154 4 C -0.079 4.079 5 C -0.168 4.168 6 C -0.018 4.018 7 C 0.016 3.984 8 C -0.476 4.476 9 H 0.020 0.980 10 C 0.007 3.993 11 N -0.955 5.955 12 Si 0.946 3.054 13 H -0.261 1.261 14 H -0.283 1.283 15 H -0.259 1.259 16 C -0.220 4.220 17 C 0.353 3.647 18 O -0.468 6.468 19 H 0.096 0.904 20 H 0.071 0.929 21 H 0.092 0.908 22 H 0.162 0.838 23 H 0.155 0.845 24 H 0.120 0.880 25 H 0.017 0.983 26 H 0.038 0.962 27 H 0.264 0.736 28 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.593 12.908 -9.106 17.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.036 4.036 3 C -0.171 4.171 4 C -0.096 4.096 5 C -0.186 4.186 6 C -0.018 4.018 7 C -0.021 4.021 8 C -0.514 4.514 9 H 0.038 0.962 10 C -0.188 4.188 11 N -0.598 5.598 12 Si 0.770 3.230 13 H -0.186 1.186 14 H -0.209 1.209 15 H -0.183 1.183 16 C -0.221 4.221 17 C 0.213 3.787 18 O -0.341 6.341 19 H 0.115 0.885 20 H 0.090 0.910 21 H 0.110 0.890 22 H 0.179 0.821 23 H 0.172 0.828 24 H 0.138 0.862 25 H 0.035 0.965 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.212 12.201 -8.958 17.220 hybrid contribution 0.775 -0.834 0.049 1.140 sum -7.437 11.367 -8.909 16.244 Atomic orbital electron populations 1.20999 0.88015 1.04330 1.04245 1.20511 0.97890 0.91215 0.93938 1.21339 0.94020 0.98342 1.03435 1.21664 0.95094 0.97762 0.95126 1.21213 1.00459 0.92342 1.04620 1.20534 0.93976 0.95945 0.91363 1.18800 0.94361 0.92291 0.96602 1.20765 1.32349 1.05674 0.92659 0.96205 1.25807 0.97251 0.97834 0.97950 1.70048 1.46369 1.21007 1.22326 0.85720 0.79265 0.77671 0.80327 1.18569 1.20915 1.18304 1.20879 0.93883 0.96992 1.10361 1.24668 0.95869 0.86755 0.71437 1.90667 1.73311 1.36351 1.33814 0.88544 0.90995 0.88964 0.82064 0.82783 0.86161 0.96515 0.94386 0.92729 0.84425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 9.48 71.23 0.68 -1.41 15 2 C -0.04 -0.97 5.92 -19.56 -0.12 -1.08 15 3 C -0.15 -3.72 9.69 22.23 0.22 -3.51 15 4 C -0.08 -2.15 10.04 22.35 0.22 -1.93 15 5 C -0.17 -6.20 9.65 22.22 0.21 -5.98 15 6 C -0.02 -0.79 5.12 -19.56 -0.10 -0.89 15 7 C 0.02 0.86 3.47 29.10 0.10 0.96 15 8 C -0.48 -29.79 8.08 25.60 0.21 -29.59 15 9 H 0.02 1.37 7.98 -2.91 -0.02 1.35 15 10 C 0.01 0.44 5.47 84.65 0.46 0.91 15 11 N -0.96 -63.93 13.96 21.44 0.30 -63.63 15 12 Si 0.95 48.75 27.47 68.60 1.88 50.63 15 13 H -0.26 -12.53 7.11 99.48 0.71 -11.82 15 14 H -0.28 -14.25 7.11 99.48 0.71 -13.54 15 15 H -0.26 -12.94 6.54 99.48 0.65 -12.29 15 16 C -0.22 -8.36 5.86 -20.15 -0.12 -8.48 15 17 C 0.35 13.54 10.76 70.17 0.76 14.30 15 18 O -0.47 -23.71 13.06 -2.95 -0.04 -23.74 15 19 H 0.10 1.28 8.14 -2.38 -0.02 1.26 15 20 H 0.07 1.25 6.42 -2.39 -0.02 1.23 15 21 H 0.09 1.20 8.09 -2.39 -0.02 1.18 15 22 H 0.16 2.52 8.06 -2.91 -0.02 2.50 15 23 H 0.15 3.02 8.06 -2.91 -0.02 3.00 15 24 H 0.12 4.27 8.03 -2.91 -0.02 4.25 15 25 H 0.02 0.85 7.42 -2.39 -0.02 0.83 15 26 H 0.04 2.09 5.21 -2.38 -0.01 2.08 15 27 H 0.26 16.47 8.31 -92.70 -0.77 15.70 15 28 H 0.14 3.62 6.47 -2.91 -0.02 3.60 15 Total: -1.00 -79.88 240.96 5.76 -74.11 By element: Atomic # 1 Polarization: -1.78 SS G_CDS: 1.10 Total: -0.68 kcal Atomic # 6 Polarization: -39.22 SS G_CDS: 2.52 Total: -36.70 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: 0.30 Total: -63.63 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.04 Total: -23.74 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 1.88 Total: 50.63 kcal Total: -79.88 5.76 -74.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306937367.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.638 kcal (2) G-P(sol) polarization free energy of solvation -79.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds