Wall clock time and date at job start Thu Apr 9 2020 14:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39028 * 119.99987 * 2 1 4 4 H 1.07995 * 120.00110 * 352.49741 * 3 2 1 5 5 C 1.40401 * 119.99608 * 172.48879 * 3 2 1 6 6 N 1.30691 * 119.99200 * 171.78067 * 5 3 2 7 7 Si 1.86792 * 120.00190 * 351.78618 * 5 3 2 8 8 H 1.48496 * 109.47472 * 84.66840 * 7 5 3 9 9 H 1.48505 * 109.47026 * 204.66741 * 7 5 3 10 10 H 1.48504 * 109.47229 * 324.66787 * 7 5 3 11 11 N 1.31840 * 119.99936 * 180.02562 * 2 1 3 12 12 N 1.40099 * 119.99924 * 359.97438 * 11 2 1 13 13 C 1.39093 * 120.00253 * 180.02562 * 12 11 2 14 14 C 1.39154 * 120.10009 * 179.97438 * 13 12 11 15 15 C 1.38023 * 119.90287 * 179.97438 * 14 13 12 16 16 C 1.38344 * 120.09621 * 359.97438 * 15 14 13 17 17 C 1.38345 * 120.19541 * 0.02562 * 16 15 14 18 18 C 1.38022 * 120.09722 * 359.97438 * 17 16 15 19 19 H 1.09007 * 109.46854 * 264.20475 * 1 2 3 20 20 H 1.08995 * 109.47374 * 24.20102 * 1 2 3 21 21 H 1.08997 * 109.47258 * 144.20693 * 1 2 3 22 22 H 0.97005 * 119.99555 * 179.97438 * 6 5 3 23 23 H 0.97004 * 120.00480 * 0.02562 * 12 11 2 24 24 H 1.07995 * 120.04483 * 359.70547 * 14 13 12 25 25 H 1.08003 * 119.95149 * 180.02562 * 15 14 13 26 26 H 1.07999 * 119.90082 * 179.97438 * 16 15 14 27 27 H 1.08001 * 119.95120 * 180.02562 * 17 16 15 28 28 H 1.07999 * 120.05107 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2022 1.2040 0.0000 4 1 1.6692 2.1353 -0.1221 5 6 3.5972 1.2091 0.1589 6 7 4.2688 2.3188 -0.0007 7 14 4.4929 -0.3699 0.5984 8 1 4.7726 -1.1414 -0.6392 9 1 5.7726 -0.0409 1.2763 10 1 3.6459 -1.1830 1.5077 11 7 2.1662 -1.1418 -0.0005 12 7 1.4657 -2.3550 -0.0005 13 6 2.1611 -3.5597 -0.0005 14 6 1.4673 -4.7659 0.0000 15 6 2.1615 -5.9589 -0.0005 16 6 3.5449 -5.9566 -0.0021 17 6 4.2387 -4.7597 -0.0027 18 6 3.5527 -3.5620 -0.0021 19 1 -0.3633 -0.1038 1.0225 20 1 -0.3634 0.9373 -0.4213 21 1 -0.3633 -0.8335 -0.6010 22 1 5.2326 2.3225 0.1094 23 1 0.4957 -2.3551 -0.0005 24 1 0.3874 -4.7686 0.0053 25 1 1.6238 -6.8956 -0.0005 26 1 4.0849 -6.8919 -0.0021 27 1 5.3187 -4.7624 -0.0043 28 1 4.0950 -2.6281 -0.0021 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714565542.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:24 Heat of formation + Delta-G solvation = 56.355695 kcal Electronic energy + Delta-G solvation = -12641.446429 eV Core-core repulsion = 10464.823184 eV Total energy + Delta-G solvation = -2176.623245 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 204.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.56456 -36.29327 -33.75807 -32.10470 -30.26521 -28.59239 -27.07861 -25.36964 -22.06775 -21.07801 -19.32798 -17.42309 -16.94211 -15.39415 -14.94973 -14.58980 -13.65338 -13.38841 -13.33040 -13.07620 -12.51444 -12.31647 -12.22732 -11.24625 -11.04953 -10.86211 -10.73129 -10.47513 -10.40457 -9.87623 -9.22347 -8.63576 -8.32784 -7.83120 -6.87110 -6.70919 -4.64026 2.05588 2.22081 3.22619 3.37398 3.66715 3.81105 4.08088 4.57935 4.58531 5.11427 5.46232 5.52083 5.78550 5.91940 5.98506 6.05770 6.24722 6.26249 6.40477 6.50336 6.60747 6.98394 7.07797 7.19791 7.24787 7.43151 7.59299 8.15059 8.29246 8.57687 8.63277 9.90633 10.05168 Molecular weight = 204.10amu Principal moments of inertia in cm(-1) A = 0.040183 B = 0.011757 C = 0.009201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.649222 B = 2381.065159 C = 3042.313122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.189 3.811 3 C -0.411 4.411 4 H 0.094 0.906 5 C 0.085 3.915 6 N -0.803 5.803 7 Si 0.986 3.014 8 H -0.271 1.271 9 H -0.332 1.332 10 H -0.242 1.242 11 N -0.450 5.450 12 N -0.573 5.573 13 C 0.255 3.745 14 C -0.227 4.227 15 C -0.073 4.073 16 C -0.210 4.210 17 C -0.078 4.078 18 C -0.198 4.198 19 H 0.060 0.940 20 H 0.066 0.934 21 H 0.046 0.954 22 H 0.288 0.712 23 H 0.367 0.633 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.870 -8.995 0.563 9.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.033 3.967 3 C -0.450 4.450 4 H 0.112 0.888 5 C -0.139 4.139 6 N -0.429 5.429 7 Si 0.822 3.178 8 H -0.199 1.199 9 H -0.265 1.265 10 H -0.168 1.168 11 N -0.279 5.279 12 N -0.282 5.282 13 C 0.145 3.855 14 C -0.252 4.252 15 C -0.092 4.092 16 C -0.231 4.231 17 C -0.097 4.097 18 C -0.220 4.220 19 H 0.079 0.921 20 H 0.085 0.915 21 H 0.065 0.935 22 H 0.098 0.902 23 H 0.205 0.795 24 H 0.127 0.873 25 H 0.128 0.872 26 H 0.125 0.875 27 H 0.128 0.872 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.960 -9.042 0.533 9.267 hybrid contribution -0.888 -0.232 0.088 0.922 sum -2.847 -9.274 0.621 9.721 Atomic orbital electron populations 1.21091 0.96051 1.01580 1.00856 1.21231 0.91216 0.92409 0.91872 1.18836 0.92080 0.92312 1.41813 0.88846 1.26470 0.98190 0.99372 0.89881 1.69587 1.10010 1.29538 1.33738 0.84975 0.73430 0.78649 0.80735 1.19915 1.26529 1.16780 1.74401 1.19300 0.88998 1.45185 1.45188 1.05195 1.01926 1.75936 1.17557 0.91737 0.84171 0.92060 1.20391 0.98636 0.91293 1.14863 1.20603 0.94109 0.96374 0.98078 1.20653 0.94132 0.97136 1.11194 1.20855 0.98901 0.92276 0.97691 1.21220 0.93059 0.99115 1.08638 0.92141 0.91499 0.93546 0.90188 0.79530 0.87300 0.87196 0.87525 0.87164 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.34 36.01 0.34 -2.27 15 2 C 0.19 4.58 6.67 -82.29 -0.55 4.03 15 3 C -0.41 -10.78 9.63 -38.48 -0.37 -11.15 15 4 H 0.09 2.45 8.05 -52.49 -0.42 2.03 15 5 C 0.08 2.27 5.53 -17.22 -0.10 2.17 15 6 N -0.80 -21.54 13.92 55.57 0.77 -20.76 15 7 Si 0.99 24.67 22.75 -169.99 -3.87 20.80 15 8 H -0.27 -6.95 6.22 56.52 0.35 -6.59 15 9 H -0.33 -8.11 7.11 56.52 0.40 -7.71 15 10 H -0.24 -6.32 6.17 56.52 0.35 -5.97 15 11 N -0.45 -11.26 5.15 33.66 0.17 -11.09 15 12 N -0.57 -12.68 6.30 32.39 0.20 -12.48 15 13 C 0.26 5.46 6.72 -83.88 -0.56 4.89 15 14 C -0.23 -4.07 9.90 -39.32 -0.39 -4.46 15 15 C -0.07 -1.18 10.04 -39.62 -0.40 -1.57 15 16 C -0.21 -3.48 10.04 -39.50 -0.40 -3.88 15 17 C -0.08 -1.45 10.04 -39.62 -0.40 -1.85 15 18 C -0.20 -4.37 9.37 -39.32 -0.37 -4.74 15 19 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 20 H 0.07 1.19 8.05 -51.93 -0.42 0.77 15 21 H 0.05 0.81 6.71 -51.93 -0.35 0.46 15 22 H 0.29 7.11 8.29 -40.82 -0.34 6.77 15 23 H 0.37 7.10 6.63 -182.59 -1.21 5.89 15 24 H 0.11 1.69 8.06 -52.49 -0.42 1.27 15 25 H 0.11 1.43 8.06 -52.48 -0.42 1.00 15 26 H 0.11 1.46 8.06 -52.49 -0.42 1.04 15 27 H 0.11 1.78 8.06 -52.49 -0.42 1.36 15 28 H 0.13 3.18 2.64 -52.49 -0.14 3.04 15 LS Contribution 235.64 15.07 3.55 3.55 Total: -1.00 -28.54 235.64 -6.24 -34.79 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -3.89 Total: 4.01 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -3.19 Total: -18.82 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: 1.15 Total: -44.33 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -3.87 Total: 20.80 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -28.54 -6.24 -34.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714565542.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.144 kcal (2) G-P(sol) polarization free energy of solvation -28.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds