Wall clock time and date at job start Thu Apr 9 2020 14:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39028 * 119.99987 * 2 1 4 4 H 1.07995 * 120.00110 * 352.49741 * 3 2 1 5 5 C 1.40401 * 119.99608 * 172.48879 * 3 2 1 6 6 N 1.30691 * 119.99200 * 171.78067 * 5 3 2 7 7 Si 1.86792 * 120.00190 * 351.78618 * 5 3 2 8 8 H 1.48496 * 109.47472 * 84.66840 * 7 5 3 9 9 H 1.48505 * 109.47026 * 204.66741 * 7 5 3 10 10 H 1.48504 * 109.47229 * 324.66787 * 7 5 3 11 11 N 1.31840 * 119.99936 * 180.02562 * 2 1 3 12 12 N 1.40099 * 119.99924 * 359.97438 * 11 2 1 13 13 C 1.39093 * 120.00253 * 180.02562 * 12 11 2 14 14 C 1.39154 * 120.10009 * 179.97438 * 13 12 11 15 15 C 1.38023 * 119.90287 * 179.97438 * 14 13 12 16 16 C 1.38344 * 120.09621 * 359.97438 * 15 14 13 17 17 C 1.38345 * 120.19541 * 0.02562 * 16 15 14 18 18 C 1.38022 * 120.09722 * 359.97438 * 17 16 15 19 19 H 1.09007 * 109.46854 * 264.20475 * 1 2 3 20 20 H 1.08995 * 109.47374 * 24.20102 * 1 2 3 21 21 H 1.08997 * 109.47258 * 144.20693 * 1 2 3 22 22 H 0.97005 * 119.99555 * 179.97438 * 6 5 3 23 23 H 0.97004 * 120.00480 * 0.02562 * 12 11 2 24 24 H 1.07995 * 120.04483 * 359.70547 * 14 13 12 25 25 H 1.08003 * 119.95149 * 180.02562 * 15 14 13 26 26 H 1.07999 * 119.90082 * 179.97438 * 16 15 14 27 27 H 1.08001 * 119.95120 * 180.02562 * 17 16 15 28 28 H 1.07999 * 120.05107 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2022 1.2040 0.0000 4 1 1.6692 2.1353 -0.1221 5 6 3.5972 1.2091 0.1589 6 7 4.2688 2.3188 -0.0007 7 14 4.4929 -0.3699 0.5984 8 1 4.7726 -1.1414 -0.6392 9 1 5.7726 -0.0409 1.2763 10 1 3.6459 -1.1830 1.5077 11 7 2.1662 -1.1418 -0.0005 12 7 1.4657 -2.3550 -0.0005 13 6 2.1611 -3.5597 -0.0005 14 6 1.4673 -4.7659 0.0000 15 6 2.1615 -5.9589 -0.0005 16 6 3.5449 -5.9566 -0.0021 17 6 4.2387 -4.7597 -0.0027 18 6 3.5527 -3.5620 -0.0021 19 1 -0.3633 -0.1038 1.0225 20 1 -0.3634 0.9373 -0.4213 21 1 -0.3633 -0.8335 -0.6010 22 1 5.2326 2.3225 0.1094 23 1 0.4957 -2.3551 -0.0005 24 1 0.3874 -4.7686 0.0053 25 1 1.6238 -6.8956 -0.0005 26 1 4.0849 -6.8919 -0.0021 27 1 5.3187 -4.7624 -0.0043 28 1 4.0950 -2.6281 -0.0021 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714565542.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:23 Heat of formation + Delta-G solvation = 38.543894 kcal Electronic energy + Delta-G solvation = -12642.218807 eV Core-core repulsion = 10464.823184 eV Total energy + Delta-G solvation = -2177.395623 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 204.096 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.05702 -38.06107 -35.57318 -33.87162 -31.69428 -30.21175 -28.75877 -27.16717 -23.52475 -22.61800 -21.17657 -19.22487 -18.55963 -16.91336 -16.79122 -16.35002 -15.22637 -15.01592 -14.93628 -14.68453 -14.03528 -13.96200 -13.85696 -13.04811 -12.75058 -12.59328 -12.42068 -12.15905 -12.06376 -11.55989 -11.21082 -10.35442 -9.77630 -9.70617 -8.88073 -8.37234 -6.58608 0.62083 0.72552 1.28242 1.37297 1.66792 1.85398 2.23636 2.74995 3.04957 3.20817 4.09757 4.22774 4.32654 4.46111 4.48175 4.65488 4.74263 4.77267 4.96061 4.98153 5.18381 5.30566 5.44374 5.68964 5.75369 5.82045 6.15472 6.21941 6.54375 6.67425 6.85265 8.08553 8.12230 Molecular weight = 204.10amu Principal moments of inertia in cm(-1) A = 0.040183 B = 0.011757 C = 0.009201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.649222 B = 2381.065159 C = 3042.313122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.182 3.818 3 C -0.440 4.440 4 H 0.084 0.916 5 C 0.059 3.941 6 N -0.833 5.833 7 Si 1.036 2.964 8 H -0.289 1.289 9 H -0.329 1.329 10 H -0.264 1.264 11 N -0.464 5.464 12 N -0.582 5.582 13 C 0.222 3.778 14 C -0.218 4.218 15 C -0.067 4.067 16 C -0.197 4.197 17 C -0.087 4.087 18 C -0.241 4.241 19 H 0.077 0.923 20 H 0.077 0.923 21 H 0.063 0.937 22 H 0.294 0.706 23 H 0.381 0.619 24 H 0.135 0.865 25 H 0.154 0.846 26 H 0.144 0.856 27 H 0.127 0.873 28 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.029 -12.118 0.621 12.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.022 3.978 3 C -0.480 4.480 4 H 0.102 0.898 5 C -0.162 4.162 6 N -0.461 5.461 7 Si 0.874 3.126 8 H -0.218 1.218 9 H -0.262 1.262 10 H -0.191 1.191 11 N -0.291 5.291 12 N -0.296 5.296 13 C 0.115 3.885 14 C -0.242 4.242 15 C -0.086 4.086 16 C -0.217 4.217 17 C -0.106 4.106 18 C -0.263 4.263 19 H 0.095 0.905 20 H 0.096 0.904 21 H 0.082 0.918 22 H 0.104 0.896 23 H 0.220 0.780 24 H 0.153 0.847 25 H 0.172 0.828 26 H 0.162 0.838 27 H 0.145 0.855 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.099 -12.207 0.592 12.608 hybrid contribution -0.573 0.422 0.057 0.714 sum -3.672 -11.786 0.649 12.361 Atomic orbital electron populations 1.21061 0.92392 1.02989 1.02357 1.21477 0.93953 0.91403 0.90973 1.18950 0.92195 0.92985 1.43898 0.89756 1.26852 0.98914 1.00247 0.90183 1.69597 1.10551 1.30038 1.35868 0.84218 0.72609 0.76542 0.79184 1.21769 1.26248 1.19064 1.74115 1.21696 0.90497 1.42812 1.44999 1.05791 1.01049 1.77794 1.17972 0.91868 0.85001 0.93708 1.20771 1.00105 0.90456 1.12908 1.21162 0.94233 0.97433 0.95746 1.21145 0.94743 0.97603 1.08208 1.21141 1.00063 0.92059 0.97289 1.21266 0.93949 0.99359 1.11761 0.90478 0.90374 0.91780 0.89577 0.77965 0.84687 0.82795 0.83795 0.85489 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 9.34 71.24 0.67 -4.06 15 2 C 0.18 8.85 6.67 42.75 0.29 9.14 15 3 C -0.44 -23.69 9.63 22.99 0.22 -23.47 15 4 H 0.08 4.57 8.05 -2.91 -0.02 4.54 15 5 C 0.06 3.23 5.53 85.39 0.47 3.70 15 6 N -0.83 -45.98 13.92 21.91 0.31 -45.68 15 7 Si 1.04 53.24 22.75 68.60 1.56 54.80 15 8 H -0.29 -15.38 6.22 99.48 0.62 -14.76 15 9 H -0.33 -16.25 7.11 99.48 0.71 -15.54 15 10 H -0.26 -14.19 6.17 99.48 0.61 -13.58 15 11 N -0.46 -23.41 5.15 -47.41 -0.24 -23.65 15 12 N -0.58 -25.25 6.30 -51.43 -0.32 -25.57 15 13 C 0.22 9.18 6.72 38.43 0.26 9.44 15 14 C -0.22 -7.03 9.90 22.44 0.22 -6.80 15 15 C -0.07 -1.83 10.04 22.24 0.22 -1.60 15 16 C -0.20 -5.61 10.04 22.32 0.22 -5.38 15 17 C -0.09 -3.05 10.04 22.24 0.22 -2.83 15 18 C -0.24 -10.56 9.37 22.44 0.21 -10.35 15 19 H 0.08 2.57 8.14 -2.38 -0.02 2.55 15 20 H 0.08 2.67 8.05 -2.39 -0.02 2.65 15 21 H 0.06 2.10 6.71 -2.39 -0.02 2.08 15 22 H 0.29 14.94 8.29 -92.70 -0.77 14.17 15 23 H 0.38 14.05 6.63 -213.32 -1.41 12.64 15 24 H 0.14 3.58 8.06 -2.91 -0.02 3.56 15 25 H 0.15 2.90 8.06 -2.91 -0.02 2.87 15 26 H 0.14 3.07 8.06 -2.91 -0.02 3.04 15 27 H 0.13 3.88 8.06 -2.91 -0.02 3.85 15 28 H 0.10 5.02 2.64 -2.91 -0.01 5.01 15 Total: -1.00 -63.11 235.64 3.88 -59.23 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -0.42 Total: 13.10 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 3.01 Total: -32.22 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -0.26 Total: -94.90 kcal Atomic # 14 Polarization: 53.24 SS G_CDS: 1.56 Total: 54.80 kcal Total: -63.11 3.88 -59.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714565542.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.774 kcal (2) G-P(sol) polarization free energy of solvation -63.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds