Wall clock time and date at job start Thu Apr 9 2020 14:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31330 * 1 3 3 Si 1.86798 * 119.99890 * 2 1 4 4 H 1.48498 * 109.46764 * 89.99909 * 3 2 1 5 5 H 1.48505 * 109.46895 * 209.99517 * 3 2 1 6 6 H 1.48489 * 109.47257 * 329.99358 * 3 2 1 7 7 C 1.39020 * 119.99531 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00023 * 327.59648 * 7 2 1 9 9 N 1.36793 * 119.99505 * 147.59742 * 7 2 1 10 10 C 1.37840 * 119.91112 * 330.37124 * 9 7 2 11 11 C 1.33008 * 121.86741 * 179.97438 * 10 9 7 12 12 N 1.38237 * 121.12500 * 0.02562 * 11 10 9 13 13 N 1.39885 * 133.15862 * 179.97438 * 12 11 10 14 14 C 1.31345 * 108.85836 * 180.02562 * 13 12 11 15 15 C 1.39056 * 108.90983 * 0.02562 * 14 13 12 16 16 C 1.37199 * 119.40545 * 359.97438 * 12 11 10 17 17 C 1.35140 * 119.90529 * 150.09182 * 9 7 2 18 18 O 1.21780 * 120.76002 * 0.02562 * 17 9 7 19 19 H 0.97004 * 120.00260 * 174.80701 * 1 2 3 20 20 H 1.08002 * 119.06678 * 359.97438 * 10 9 7 21 21 H 1.07991 * 119.43681 * 180.02562 * 11 10 9 22 22 H 1.08001 * 125.54591 * 180.02562 * 14 13 12 23 23 H 1.07999 * 126.22278 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.4947 2.0464 1.4001 5 1 3.5449 1.4401 -0.7000 6 1 1.4448 2.6526 -0.7001 7 6 2.0083 -1.2040 0.0005 8 1 1.5944 -2.0662 0.5021 9 7 3.2165 -1.2965 -0.6343 10 6 3.4794 -0.5034 -1.7306 11 6 4.6406 -0.5610 -2.3767 12 7 5.6406 -1.4259 -1.9733 13 7 6.9276 -1.6910 -2.4532 14 6 7.4784 -2.6171 -1.7020 15 6 6.5766 -2.9886 -0.7108 16 6 5.4314 -2.2381 -0.8875 17 6 4.1511 -2.1612 -0.1814 18 8 3.9317 -2.8635 0.7890 19 1 -0.4851 -0.8366 -0.0760 20 1 2.7210 0.1843 -2.0747 21 1 4.8049 0.0788 -3.2310 22 1 8.4702 -3.0239 -1.8330 23 1 6.7424 -3.7290 0.0578 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157052344.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:10 Heat of formation + Delta-G solvation = 75.229194 kcal Electronic energy + Delta-G solvation = -12899.420149 eV Core-core repulsion = 10522.356314 eV Total energy + Delta-G solvation = -2377.063834 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.059 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.37695 -38.89635 -36.21066 -33.85171 -32.08326 -29.79442 -28.68053 -25.65062 -23.11647 -22.15169 -20.59280 -18.97859 -17.92159 -16.65137 -15.96760 -15.46651 -14.49425 -14.32603 -14.10324 -13.61562 -13.02375 -12.80652 -12.66709 -12.02379 -11.51832 -11.13704 -10.47113 -10.42545 -10.09069 -9.86980 -9.33879 -8.81263 -8.55904 -7.52539 -7.13232 -4.51861 1.58996 2.13453 2.84755 2.97182 3.08216 3.19130 3.21445 3.72573 3.84346 4.07050 4.62238 4.94792 5.01860 5.46717 5.73464 5.99643 6.15732 6.34897 6.38303 7.04816 7.18012 7.42972 7.61426 7.73939 8.10061 8.40002 8.55718 9.08865 9.91212 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.049641 B = 0.012770 C = 0.011090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.915993 B = 2192.197897 C = 2524.125236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.040 3.960 3 Si 1.020 2.980 4 H -0.272 1.272 5 H -0.259 1.259 6 H -0.266 1.266 7 C -0.425 4.425 8 H 0.114 0.886 9 N -0.342 5.342 10 C 0.082 3.918 11 C -0.060 4.060 12 N -0.253 5.253 13 N -0.309 5.309 14 C 0.036 3.964 15 C -0.234 4.234 16 C 0.013 3.987 17 C 0.503 3.497 18 O -0.533 6.533 19 H 0.290 0.710 20 H 0.167 0.833 21 H 0.166 0.834 22 H 0.186 0.814 23 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.821 1.289 -4.320 8.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.177 4.177 3 Si 0.843 3.157 4 H -0.198 1.198 5 H -0.184 1.184 6 H -0.191 1.191 7 C -0.552 4.552 8 H 0.131 0.869 9 N -0.043 5.043 10 C -0.047 4.047 11 C -0.182 4.182 12 N -0.028 5.028 13 N -0.136 5.136 14 C -0.141 4.141 15 C -0.266 4.266 16 C -0.115 4.115 17 C 0.298 3.702 18 O -0.413 6.413 19 H 0.101 0.899 20 H 0.184 0.816 21 H 0.184 0.816 22 H 0.203 0.797 23 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.537 3.259 -4.673 8.671 hybrid contribution -0.001 -2.119 0.690 2.229 sum 6.536 1.139 -3.983 7.739 Atomic orbital electron populations 1.70744 1.06954 1.32303 1.33892 1.26630 0.95860 1.02006 0.93191 0.84287 0.76742 0.75209 0.79466 1.19815 1.18351 1.19078 1.20833 0.93192 1.01838 1.39371 0.86865 1.41647 1.13393 1.29073 1.20204 1.21306 0.96994 0.97492 0.88910 1.20262 0.87444 1.03713 1.06828 1.46266 1.10604 1.26030 1.19863 1.77435 0.90264 1.21904 1.24026 1.23623 1.00085 0.96149 0.94232 1.21111 0.92714 1.07352 1.05439 1.22001 0.98135 0.98528 0.92874 1.17351 0.82142 0.85474 0.85208 1.90745 1.78946 1.44441 1.27139 0.89876 0.81611 0.81630 0.79684 0.83224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.54 13.68 55.50 0.76 -19.78 14 2 C 0.04 0.97 5.02 -17.48 -0.09 0.88 14 3 Si 1.02 20.73 26.84 -169.99 -4.56 16.17 14 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 14 5 H -0.26 -4.88 5.35 56.52 0.30 -4.58 14 6 H -0.27 -5.14 7.11 56.52 0.40 -4.74 14 7 C -0.43 -11.07 9.25 -15.05 -0.14 -11.21 14 8 H 0.11 3.25 7.77 -52.49 -0.41 2.84 14 9 N -0.34 -8.33 2.52 -62.95 -0.16 -8.48 14 10 C 0.08 1.67 6.98 -16.66 -0.12 1.55 14 11 C -0.06 -1.14 11.15 -16.48 -0.18 -1.32 14 12 N -0.25 -5.32 3.99 -9.43 -0.04 -5.36 14 13 N -0.31 -6.00 12.67 30.54 0.39 -5.61 14 14 C 0.04 0.61 11.96 -17.46 -0.21 0.40 14 15 C -0.23 -4.50 10.90 -39.34 -0.43 -4.93 14 16 C 0.01 0.29 7.00 -82.24 -0.58 -0.28 14 17 C 0.50 12.72 7.60 -12.81 -0.10 12.63 14 18 O -0.53 -14.87 16.98 5.12 0.09 -14.78 14 19 H 0.29 7.23 8.73 -40.82 -0.36 6.87 14 20 H 0.17 3.00 5.71 -52.49 -0.30 2.70 14 21 H 0.17 2.50 8.06 -52.49 -0.42 2.08 14 22 H 0.19 2.21 8.06 -52.49 -0.42 1.79 14 23 H 0.15 2.59 8.06 -52.49 -0.42 2.16 14 LS Contribution 212.49 15.07 3.20 3.20 Total: -1.00 -29.67 212.49 -3.39 -33.06 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -1.23 Total: 3.87 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -1.84 Total: -2.29 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.95 Total: -39.23 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.09 Total: -14.78 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.56 Total: 16.17 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -29.67 -3.39 -33.06 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157052344.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.290 kcal (2) G-P(sol) polarization free energy of solvation -29.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds