Wall clock time and date at job start Thu Apr 9 2020 14:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30892 * 1 3 3 Si 1.86798 * 119.99982 * 2 1 4 4 H 1.48501 * 109.47385 * 240.00636 * 3 2 1 5 5 H 1.48503 * 109.47045 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47036 * 120.00355 * 3 2 1 7 7 C 1.39900 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00091 * 162.55566 * 7 2 1 9 9 C 1.40968 * 119.99774 * 342.55977 * 7 2 1 10 10 C 1.40620 * 119.98514 * 334.40855 * 9 7 2 11 11 C 1.38126 * 119.60953 * 180.02562 * 10 9 7 12 12 N 1.38189 * 133.24165 * 180.33709 * 11 10 9 13 13 H 0.96998 * 125.59591 * 359.97148 * 12 11 10 14 14 C 1.36684 * 108.80823 * 180.11570 * 12 11 10 15 15 C 1.34689 * 109.72029 * 359.56891 * 14 12 11 16 16 C 1.41221 * 119.80201 * 0.02562 * 11 10 9 17 17 C 1.40423 * 120.14926 * 359.97438 * 16 11 10 18 18 C 1.35991 * 120.13239 * 0.06075 * 17 16 11 19 19 F 1.35101 * 119.85896 * 179.97438 * 18 17 16 20 20 H 0.96997 * 120.00487 * 359.97438 * 1 2 3 21 21 H 1.08005 * 120.19922 * 359.97438 * 10 9 7 22 22 H 1.08002 * 125.14286 * 179.83133 * 14 12 11 23 23 H 1.08007 * 126.02086 * 180.28823 * 15 14 12 24 24 H 1.07996 * 119.92706 * 179.97438 * 17 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0966 1.6965 -1.2126 5 1 1.2779 2.7464 0.0006 6 1 3.0967 1.6963 1.2125 7 6 2.0085 -1.2115 -0.0005 8 1 3.0511 -1.2329 -0.2809 9 6 1.3522 -2.4045 0.3648 10 6 0.2321 -2.3587 1.2138 11 6 -0.4046 -3.5324 1.5673 12 7 -1.5031 -3.8126 2.3574 13 1 -2.0422 -3.1575 2.8277 14 6 -1.7035 -5.1646 2.3702 15 6 -0.7743 -5.7690 1.6051 16 6 0.0738 -4.7664 1.0746 17 6 1.1931 -4.8013 0.2273 18 6 1.8217 -3.6469 -0.1212 19 9 2.8985 -3.6869 -0.9362 20 1 -0.4851 0.8400 0.0004 21 1 -0.1276 -1.4116 1.5880 22 1 -2.4906 -5.6714 2.9088 23 1 -0.6908 -6.8310 1.4273 24 1 1.5561 -5.7470 -0.1471 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214074506.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:21 Heat of formation + Delta-G solvation = -18.300195 kcal Electronic energy + Delta-G solvation = -12551.907230 eV Core-core repulsion = 10150.867695 eV Total energy + Delta-G solvation = -2401.039535 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.060 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.28675 -41.68524 -37.56784 -35.14962 -32.45315 -30.34763 -29.55510 -26.64712 -23.51751 -22.25424 -21.25007 -19.25998 -18.56229 -17.72988 -16.82162 -16.38433 -16.07773 -15.44900 -14.83102 -14.47929 -14.22253 -13.93843 -13.68578 -13.19758 -13.05500 -12.72656 -12.44370 -11.97383 -11.71631 -11.38094 -11.01019 -10.30646 -8.90558 -8.62716 -8.41013 -6.30268 0.57158 0.97319 1.37319 1.47598 1.50742 2.15646 2.20945 2.62613 2.74460 3.54433 3.92913 4.19428 4.49220 4.71194 4.85205 5.00532 5.03285 5.22712 5.38472 5.47953 5.71854 5.95330 6.00539 6.24203 6.29780 6.62894 6.79799 6.89280 7.10700 8.29186 Molecular weight = 205.06amu Principal moments of inertia in cm(-1) A = 0.040475 B = 0.011696 C = 0.009304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.617648 B = 2393.477479 C = 3008.768852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.038 3.962 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.262 1.262 6 H -0.259 1.259 7 C -0.493 4.493 8 H 0.072 0.928 9 C 0.066 3.934 10 C -0.204 4.204 11 C 0.101 3.899 12 N -0.597 5.597 13 H 0.421 0.579 14 C 0.028 3.972 15 C -0.215 4.215 16 C -0.192 4.192 17 C -0.104 4.104 18 C -0.029 4.029 19 F -0.167 7.167 20 H 0.290 0.710 21 H 0.111 0.889 22 H 0.208 0.792 23 H 0.154 0.846 24 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.619 -3.255 4.481 6.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.177 4.177 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.184 1.184 7 C -0.522 4.522 8 H 0.090 0.910 9 C 0.062 3.938 10 C -0.228 4.228 11 C -0.007 4.007 12 N -0.202 5.202 13 H 0.259 0.741 14 C -0.097 4.097 15 C -0.240 4.240 16 C -0.197 4.197 17 C -0.123 4.123 18 C -0.049 4.049 19 F -0.146 7.146 20 H 0.101 0.899 21 H 0.128 0.872 22 H 0.225 0.775 23 H 0.171 0.829 24 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.893 -3.061 4.506 6.695 hybrid contribution 0.428 1.024 -0.242 1.136 sum -3.465 -2.037 4.263 5.859 Atomic orbital electron populations 1.69887 1.08859 1.30749 1.34919 1.26700 0.95559 1.04290 0.91154 0.85223 0.78839 0.75413 0.80079 1.18635 1.18596 1.18364 1.19541 0.98150 0.92432 1.42108 0.90956 1.17551 0.93303 0.91451 0.91486 1.19772 1.02037 0.94853 1.06106 1.18487 0.90722 0.95183 0.96257 1.41833 1.26109 1.08125 1.44152 0.74136 1.22313 1.02222 0.81848 1.03337 1.20762 0.99036 0.98665 1.05534 1.18062 1.00643 0.94133 1.06842 1.19991 0.96385 0.96112 0.99861 1.17758 0.90936 0.95642 1.00554 1.91257 1.54168 1.97433 1.71737 0.89897 0.87151 0.77521 0.82869 0.85312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.89 10.98 21.82 0.24 -42.65 14 2 C 0.04 1.97 5.13 85.24 0.44 2.41 14 3 Si 0.98 38.81 29.59 68.60 2.03 40.84 14 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 14 5 H -0.26 -9.53 7.11 99.48 0.71 -8.83 14 6 H -0.26 -9.99 7.11 99.48 0.71 -9.29 14 7 C -0.49 -27.89 8.74 23.34 0.20 -27.68 14 8 H 0.07 4.06 7.72 -2.91 -0.02 4.04 14 9 C 0.07 3.77 5.57 -21.24 -0.12 3.66 14 10 C -0.20 -10.92 8.69 22.82 0.20 -10.72 14 11 C 0.10 4.73 7.24 38.85 0.28 5.01 14 12 N -0.60 -21.22 6.16 -187.34 -1.15 -22.37 14 13 H 0.42 12.25 8.96 -92.71 -0.83 11.41 14 14 C 0.03 0.84 11.84 83.12 0.98 1.82 14 15 C -0.21 -7.60 10.84 22.29 0.24 -7.35 14 16 C -0.19 -8.76 6.19 -21.18 -0.13 -8.89 14 17 C -0.10 -4.96 9.99 22.28 0.22 -4.74 14 18 C -0.03 -1.56 7.23 22.53 0.16 -1.40 14 19 F -0.17 -8.84 16.67 44.97 0.75 -8.09 14 20 H 0.29 13.61 8.30 -92.71 -0.77 12.85 14 21 H 0.11 6.03 6.20 -2.91 -0.02 6.02 14 22 H 0.21 3.82 8.06 -2.91 -0.02 3.79 14 23 H 0.15 4.43 8.06 -2.91 -0.02 4.41 14 24 H 0.13 5.32 8.06 -2.91 -0.02 5.30 14 Total: -1.00 -64.66 221.54 4.76 -59.91 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.41 Total: 20.25 kcal Atomic # 6 Polarization: -50.37 SS G_CDS: 2.48 Total: -47.88 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: -0.91 Total: -65.02 kcal Atomic # 9 Polarization: -8.84 SS G_CDS: 0.75 Total: -8.09 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -64.66 4.76 -59.91 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214074506.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.606 kcal (2) G-P(sol) polarization free energy of solvation -64.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds