Wall clock time and date at job start Thu Apr 9 2020 14:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86795 * 119.99705 * 2 1 4 4 H 1.48502 * 109.47105 * 275.39679 * 3 2 1 5 5 H 1.48496 * 109.47439 * 35.40105 * 3 2 1 6 6 H 1.48506 * 109.47154 * 155.40434 * 3 2 1 7 7 C 1.40039 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00716 * 341.69970 * 7 2 1 9 9 C 1.40677 * 119.99485 * 161.69999 * 7 2 1 10 10 C 1.40391 * 120.43848 * 330.18693 * 9 7 2 11 11 C 1.37640 * 120.26967 * 180.02562 * 10 9 7 12 12 C 1.38240 * 121.02459 * 359.97438 * 11 10 9 13 13 C 1.39268 * 121.23150 * 0.02562 * 12 11 10 14 14 S 1.76149 * 131.70754 * 180.02562 * 13 12 11 15 15 C 1.70697 * 90.69018 * 179.97438 * 14 13 12 16 16 N 1.28343 * 111.29087 * 0.02562 * 15 14 13 17 17 C 1.33232 * 118.02668 * 0.02562 * 16 15 14 18 18 H 0.97004 * 120.00310 * 0.02562 * 1 2 3 19 19 H 1.08001 * 119.86203 * 0.02829 * 10 9 7 20 20 H 1.08003 * 119.48569 * 179.97438 * 11 10 9 21 21 H 1.08006 * 119.38301 * 180.02562 * 12 11 10 22 22 H 1.08005 * 124.35799 * 179.73258 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3755 2.1123 -1.3939 5 1 1.5013 2.6170 0.8110 6 1 3.5921 1.4100 0.5827 7 6 2.0083 -1.2128 0.0005 8 1 1.5094 -2.1243 0.2946 9 6 3.3617 -1.2437 -0.3820 10 6 3.8593 -0.3172 -1.3120 11 6 5.1840 -0.3509 -1.6842 12 6 6.0491 -1.2902 -1.1548 13 6 5.6117 -2.2338 -0.2286 14 16 6.4567 -3.5322 0.6099 15 6 5.0190 -3.9747 1.4167 16 7 4.0405 -3.2180 1.0741 17 6 4.2769 -2.2519 0.1876 18 1 -0.4851 0.8401 -0.0004 19 1 3.1999 0.4251 -1.7371 20 1 5.5532 0.3676 -2.4010 21 1 7.0836 -1.2923 -1.4653 22 1 4.9414 -4.7897 2.1211 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214081116.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:27 Heat of formation + Delta-G solvation = 43.194303 kcal Electronic energy + Delta-G solvation = -10629.050980 eV Core-core repulsion = 8661.058128 eV Total energy + Delta-G solvation = -1967.992852 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 205.026 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.87842 -35.76944 -33.91830 -30.70526 -28.71753 -25.48082 -23.71571 -21.54472 -20.12818 -18.13494 -16.83331 -15.41024 -15.23458 -14.65543 -13.98910 -13.57642 -13.28538 -12.45868 -12.17825 -11.88409 -11.56670 -11.04303 -10.87367 -10.36427 -10.09497 -9.90092 -9.46014 -8.84110 -8.57602 -7.67291 -7.34585 -7.24196 -4.70821 1.51601 2.31881 2.35489 2.75973 2.93140 3.01105 3.15459 3.54914 3.75709 4.21338 5.10427 5.16748 5.81760 5.97823 6.10966 6.37618 6.62787 6.76981 6.79287 7.29908 7.36787 7.57917 7.69718 7.99180 8.22387 8.39484 8.89415 9.63162 Molecular weight = 205.03amu Principal moments of inertia in cm(-1) A = 0.046392 B = 0.012818 C = 0.010717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.408671 B = 2183.879813 C = 2612.063986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.077 3.923 3 Si 0.921 3.079 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.239 1.239 7 C -0.379 4.379 8 H 0.105 0.895 9 C 0.140 3.860 10 C -0.265 4.265 11 C -0.031 4.031 12 C -0.233 4.233 13 C -0.093 4.093 14 S -0.004 6.004 15 C -0.029 4.029 16 N -0.417 5.417 17 C -0.026 4.026 18 H 0.295 0.705 19 H 0.111 0.889 20 H 0.105 0.895 21 H 0.100 0.900 22 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.311 0.388 -0.353 6.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.147 4.147 3 Si 0.746 3.254 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.162 1.162 7 C -0.405 4.405 8 H 0.122 0.878 9 C 0.133 3.867 10 C -0.287 4.287 11 C -0.053 4.053 12 C -0.259 4.259 13 C -0.211 4.211 14 S 0.247 5.753 15 C -0.330 4.330 16 N -0.127 5.127 17 C -0.149 4.149 18 H 0.106 0.894 19 H 0.129 0.871 20 H 0.123 0.877 21 H 0.118 0.882 22 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 6.435 -0.135 0.043 6.437 hybrid contribution -0.416 1.112 -0.245 1.212 sum 6.019 0.976 -0.203 6.101 Atomic orbital electron populations 1.69664 1.08432 1.31526 1.29424 1.26498 0.94974 1.02596 0.90660 0.86123 0.81491 0.78369 0.79438 1.18854 1.21243 1.16197 1.19728 0.92594 0.96611 1.31612 0.87758 1.18113 0.91121 0.88212 0.89229 1.20667 0.96154 1.05947 1.05913 1.20435 0.93091 0.95436 0.96291 1.19359 0.98923 1.01418 1.06233 1.23482 0.96159 0.99541 1.01919 1.83228 1.17718 1.31134 1.43254 1.27240 0.90674 1.06131 1.08937 1.65258 1.32611 1.03520 1.11296 1.19892 0.91303 1.01763 1.01916 0.89402 0.87139 0.87706 0.88220 0.80223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.07 13.93 55.55 0.77 -18.29 14 2 C 0.08 1.91 5.40 -17.31 -0.09 1.81 14 3 Si 0.92 19.53 24.53 -169.99 -4.17 15.36 14 4 H -0.26 -5.26 6.71 56.52 0.38 -4.88 14 5 H -0.29 -5.77 7.11 56.52 0.40 -5.37 14 6 H -0.24 -5.33 6.87 56.52 0.39 -4.94 14 7 C -0.38 -10.10 9.57 -37.99 -0.36 -10.46 14 8 H 0.10 2.98 8.06 -52.49 -0.42 2.56 14 9 C 0.14 3.61 5.29 -104.35 -0.55 3.06 14 10 C -0.26 -6.19 7.15 -38.99 -0.28 -6.47 14 11 C -0.03 -0.65 9.96 -39.80 -0.40 -1.05 14 12 C -0.23 -5.01 10.02 -39.20 -0.39 -5.40 14 13 C -0.09 -2.14 6.56 -38.60 -0.25 -2.39 14 14 S 0.00 -0.08 23.18 -107.50 -2.49 -2.58 14 15 C -0.03 -0.59 12.13 51.30 0.62 0.03 14 16 N -0.42 -10.20 10.48 -11.32 -0.12 -10.32 14 17 C -0.03 -0.65 6.98 -82.84 -0.58 -1.23 14 18 H 0.30 6.47 8.30 -40.82 -0.34 6.13 14 19 H 0.11 2.46 4.72 -52.49 -0.25 2.22 14 20 H 0.10 1.82 8.06 -52.48 -0.42 1.40 14 21 H 0.10 1.88 8.06 -52.48 -0.42 1.46 14 22 H 0.18 2.88 8.06 -52.48 -0.42 2.45 14 LS Contribution 211.12 15.07 3.18 3.18 Total: -1.00 -27.50 211.12 -6.22 -33.72 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -1.11 Total: 1.02 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -2.29 Total: -22.10 kcal Atomic # 7 Polarization: -29.27 SS G_CDS: 0.66 Total: -28.61 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.17 Total: 15.36 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -2.49 Total: -2.58 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -27.50 -6.22 -33.72 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214081116.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.912 kcal (2) G-P(sol) polarization free energy of solvation -27.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds