Wall clock time and date at job start Thu Apr 9 2020 14:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86804 * 120.00220 * 2 1 4 4 H 1.48504 * 109.46610 * 274.82828 * 3 2 1 5 5 H 1.48497 * 109.46979 * 34.82716 * 3 2 1 6 6 H 1.48496 * 109.47471 * 154.83313 * 3 2 1 7 7 C 1.38953 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00148 * 162.63535 * 7 2 1 9 9 N 1.37099 * 120.00043 * 342.64245 * 7 2 1 10 10 C 1.33797 * 125.25916 * 169.13174 * 9 7 2 11 11 O 1.21298 * 121.20552 * 0.51512 * 10 9 7 12 12 C 1.49967 * 117.59205 * 180.49342 * 10 9 7 13 13 C 1.54938 * 107.92908 * 341.25675 * 12 10 9 14 14 S 1.66838 * 125.25594 * 349.15126 * 9 7 2 15 15 O 1.42098 * 105.35439 * 79.51761 * 14 9 7 16 16 O 1.42107 * 105.35583 * 309.37171 * 14 9 7 17 17 H 0.97007 * 119.99994 * 0.02562 * 1 2 3 18 18 H 1.09005 * 109.77576 * 221.64223 * 12 10 9 19 19 H 1.08992 * 109.79555 * 100.88334 * 12 10 9 20 20 H 1.09002 * 111.28789 * 267.21195 * 13 12 10 21 21 H 1.08997 * 111.28705 * 142.62955 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3935 2.1052 -1.3952 5 1 1.5003 2.6210 0.7996 6 1 3.5930 1.4129 0.5954 7 6 2.0088 -1.2034 0.0005 8 1 3.0519 -1.2248 -0.2786 9 7 1.3702 -2.3635 0.3553 10 6 1.8652 -3.5966 0.1987 11 8 2.9647 -3.7762 -0.2809 12 6 1.0116 -4.7487 0.6381 13 6 -0.0655 -4.2016 1.6082 14 16 -0.1446 -2.4557 1.0485 15 8 -1.0605 -2.2962 -0.0262 16 8 -0.1107 -1.5561 2.1479 17 1 -0.4850 0.8401 -0.0004 18 1 1.6265 -5.4893 1.1496 19 1 0.5309 -5.2034 -0.2280 20 1 0.2641 -4.2702 2.6449 21 1 -1.0206 -4.7068 1.4648 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259257811.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:51 Heat of formation + Delta-G solvation = -123.083076 kcal Electronic energy + Delta-G solvation = -12196.479071 eV Core-core repulsion = 9778.133877 eV Total energy + Delta-G solvation = -2418.345194 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 205.024 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.87173 -37.71945 -36.79596 -36.29787 -35.10132 -33.01380 -27.58682 -25.67718 -22.13347 -21.40378 -19.09785 -17.86970 -17.51401 -17.11401 -16.39157 -16.11589 -15.64293 -15.28277 -14.73901 -14.38305 -13.66866 -13.35733 -13.03923 -12.71625 -12.63415 -12.46871 -12.24648 -12.06838 -11.81339 -11.38602 -10.81104 -10.51258 -8.71776 -6.32763 -0.62589 1.23785 1.36721 1.54045 1.57422 1.86489 2.27210 2.82043 2.97004 3.17042 3.49353 3.60482 4.26122 4.50910 4.61081 4.68701 5.25200 5.32642 5.90646 6.63465 6.82668 7.18780 8.42404 Molecular weight = 205.02amu Principal moments of inertia in cm(-1) A = 0.044815 B = 0.018434 C = 0.014569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.645962 B = 1518.537464 C = 1921.418863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.024 4.024 3 Si 1.013 2.987 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.337 4.337 8 H 0.098 0.902 9 N -0.781 5.781 10 C 0.429 3.571 11 O -0.583 6.583 12 C -0.127 4.127 13 C -0.580 4.580 14 S 2.572 3.428 15 O -0.961 6.961 16 O -0.983 6.983 17 H 0.291 0.709 18 H 0.158 0.842 19 H 0.147 0.853 20 H 0.174 0.826 21 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.106 -7.477 4.432 8.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.225 4.225 3 Si 0.833 3.167 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.464 4.464 8 H 0.116 0.884 9 N -0.611 5.611 10 C 0.218 3.782 11 O -0.464 6.464 12 C -0.167 4.167 13 C -0.712 4.712 14 S 2.669 3.331 15 O -0.950 6.950 16 O -0.973 6.973 17 H 0.102 0.898 18 H 0.176 0.824 19 H 0.165 0.835 20 H 0.192 0.808 21 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -2.363 -6.625 4.216 8.200 hybrid contribution 0.591 0.388 -0.216 0.739 sum -1.771 -6.237 3.999 7.618 Atomic orbital electron populations 1.69385 1.07102 1.31023 1.47489 1.26572 0.96765 1.04303 0.94878 0.84640 0.78133 0.74820 0.79107 1.18635 1.19420 1.18044 1.19327 0.96576 0.82363 1.48098 0.88443 1.52396 1.36490 1.10464 1.61710 1.21813 0.89583 0.85163 0.81673 1.90524 1.22470 1.86324 1.47116 1.22046 0.96358 0.96190 1.02133 1.30897 1.09647 1.20182 1.10485 1.06592 0.73148 0.78499 0.74855 1.93491 1.61714 1.85929 1.53912 1.93422 1.85188 1.62890 1.55824 0.89829 0.82388 0.83541 0.80816 0.79174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.05 9.38 21.66 0.20 -53.85 14 2 C -0.02 -1.39 5.04 84.93 0.43 -0.96 14 3 Si 1.01 44.63 29.59 68.60 2.03 46.66 14 4 H -0.26 -10.86 7.11 99.48 0.71 -10.16 14 5 H -0.27 -11.43 7.11 99.48 0.71 -10.72 14 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 14 7 C -0.34 -19.59 9.72 84.04 0.82 -18.77 14 8 H 0.10 5.72 7.67 -2.91 -0.02 5.70 14 9 N -0.78 -40.72 3.06 -309.03 -0.95 -41.67 14 10 C 0.43 19.31 7.62 87.58 0.67 19.98 14 11 O -0.58 -30.41 17.30 -3.08 -0.05 -30.46 14 12 C -0.13 -3.45 6.49 30.28 0.20 -3.25 14 13 C -0.58 -14.10 7.72 72.64 0.56 -13.54 14 14 S 2.57 116.25 4.70 -56.49 -0.27 115.98 14 15 O -0.96 -49.92 16.59 -127.80 -2.12 -52.04 14 16 O -0.98 -51.16 16.76 -127.80 -2.14 -53.30 14 17 H 0.29 16.30 8.31 -92.70 -0.77 15.53 14 18 H 0.16 3.13 8.14 -2.38 -0.02 3.11 14 19 H 0.15 3.20 8.14 -2.39 -0.02 3.18 14 20 H 0.17 3.18 8.14 -2.39 -0.02 3.16 14 21 H 0.19 2.87 8.14 -2.39 -0.02 2.86 14 Total: -1.00 -83.30 203.84 0.63 -82.68 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: 1.25 Total: 2.53 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 2.67 Total: -16.54 kcal Atomic # 7 Polarization: -94.78 SS G_CDS: -0.74 Total: -95.52 kcal Atomic # 8 Polarization: -131.48 SS G_CDS: -4.32 Total: -135.80 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 116.25 SS G_CDS: -0.27 Total: 115.98 kcal Total: -83.30 0.63 -82.68 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259257811.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.405 kcal (2) G-P(sol) polarization free energy of solvation -83.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds