Wall clock time and date at job start Thu Apr 9 2020 14:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86800 * 120.00510 * 2 1 4 4 H 1.48498 * 109.47061 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46962 * 299.99896 * 3 2 1 6 6 H 1.48499 * 109.47316 * 59.99482 * 3 2 1 7 7 C 1.38636 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00408 * 180.02562 * 7 2 1 9 9 O 1.34824 * 119.99650 * 0.28081 * 7 2 1 10 10 C 1.35748 * 116.99517 * 174.63886 * 9 7 2 11 11 C 1.39335 * 119.83406 * 185.52906 * 10 9 7 12 12 C 1.36550 * 120.48922 * 179.97438 * 11 10 9 13 13 C 1.39667 * 119.93879 * 0.02562 * 12 11 10 14 14 N 1.36064 * 133.73262 * 179.97438 * 13 12 11 15 15 C 1.29917 * 108.81867 * 180.02562 * 14 13 12 16 16 O 1.34274 * 110.29540 * 0.02562 * 15 14 13 17 17 C 1.35112 * 108.14814 * 0.02562 * 16 15 14 18 18 C 1.38559 * 133.96140 * 180.33111 * 17 16 15 19 19 H 0.97000 * 119.99789 * 0.02562 * 1 2 3 20 20 H 1.07996 * 119.75560 * 0.02562 * 11 10 9 21 21 H 1.08002 * 120.03361 * 180.02562 * 12 11 10 22 22 H 1.07991 * 124.84956 * 179.97438 * 15 14 13 23 23 H 1.08005 * 120.16213 * 359.94309 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 3.7098 1.3462 -0.0006 5 1 1.8911 2.3963 -1.2125 6 1 1.8911 2.3965 1.2124 7 6 2.0088 -1.2006 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3682 -0.0047 10 6 2.0698 -3.5038 -0.1168 11 6 1.4292 -4.7345 -0.2447 12 6 2.1556 -5.8851 -0.3589 13 6 3.5512 -5.8324 -0.3475 14 7 4.5289 -6.7743 -0.4389 15 6 5.6852 -6.1858 -0.3736 16 8 5.5258 -4.8594 -0.2386 17 6 4.2010 -4.5948 -0.2168 18 6 3.4539 -3.4331 -0.1068 19 1 -0.4850 0.8401 -0.0004 20 1 0.3502 -4.7787 -0.2543 21 1 1.6514 -6.8351 -0.4580 22 1 6.6384 -6.6913 -0.4202 23 1 3.9477 -2.4772 -0.0122 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259423323.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:53 Heat of formation + Delta-G solvation = -11.435716 kcal Electronic energy + Delta-G solvation = -12408.705801 eV Core-core repulsion = 9995.591143 eV Total energy + Delta-G solvation = -2413.114658 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 205.053 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.01914 -40.55708 -37.64655 -35.35965 -34.28776 -31.65898 -29.83652 -27.51067 -24.61138 -23.62186 -22.79316 -20.26364 -19.31791 -18.46028 -17.67947 -17.53462 -16.37688 -15.78612 -15.59475 -15.33666 -15.00407 -14.39870 -13.67212 -13.60713 -13.14184 -12.79016 -12.67226 -12.12579 -11.99737 -11.79476 -11.26215 -10.81719 -9.82803 -8.94399 -8.56218 -6.24044 -0.05765 0.34290 1.35524 1.39770 1.53442 1.62950 1.75267 2.13445 2.65981 3.01062 3.23284 3.30160 3.68796 4.19223 4.24874 4.31722 4.53773 4.94712 4.99453 5.17358 5.25584 5.33725 5.51787 5.72742 5.90729 6.71644 6.87681 7.57792 8.65216 Molecular weight = 205.05amu Principal moments of inertia in cm(-1) A = 0.054906 B = 0.008844 C = 0.007643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.844118 B = 3165.286822 C = 3662.727183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.013 4.013 3 Si 1.019 2.981 4 H -0.254 1.254 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.420 4.420 8 H 0.103 0.897 9 O -0.203 6.203 10 C 0.150 3.850 11 C -0.169 4.169 12 C -0.014 4.014 13 C -0.073 4.073 14 N -0.498 5.498 15 C 0.211 3.789 16 O -0.232 6.232 17 C 0.047 3.953 18 C -0.245 4.245 19 H 0.277 0.723 20 H 0.149 0.851 21 H 0.165 0.835 22 H 0.307 0.693 23 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.881 -6.928 -0.651 11.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.212 4.212 3 Si 0.837 3.163 4 H -0.178 1.178 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.496 4.496 8 H 0.121 0.879 9 O -0.108 6.108 10 C 0.097 3.903 11 C -0.188 4.188 12 C -0.033 4.033 13 C -0.183 4.183 14 N -0.226 5.226 15 C -0.019 4.019 16 O -0.125 6.125 17 C -0.003 4.003 18 C -0.265 4.265 19 H 0.087 0.913 20 H 0.167 0.833 21 H 0.183 0.817 22 H 0.322 0.678 23 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.319 -7.378 -0.694 11.142 hybrid contribution 0.373 1.495 0.106 1.544 sum 8.692 -5.883 -0.588 10.512 Atomic orbital electron populations 1.70161 1.07914 1.29287 1.46983 1.26583 0.96858 1.02631 0.95153 0.84531 0.78169 0.74711 0.78840 1.17765 1.19057 1.19005 1.21909 0.92714 0.81150 1.53787 0.87948 1.83987 1.35148 1.12395 1.79282 1.19414 0.89460 0.88541 0.92847 1.20249 1.01349 0.88946 1.08301 1.19943 0.89155 0.98719 0.95488 1.19865 0.95711 0.88718 1.14029 1.70392 0.98950 1.33045 1.20202 1.29284 1.00691 0.76200 0.95764 1.84477 1.23841 1.29550 1.74588 1.19991 0.81598 0.96697 1.02041 1.19600 0.92350 0.96264 1.18316 0.91333 0.83326 0.81747 0.67791 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.06 13.67 21.61 0.30 -52.77 14 2 C -0.01 -0.68 5.49 84.83 0.47 -0.22 14 3 Si 1.02 41.23 29.55 68.60 2.03 43.26 14 4 H -0.25 -9.67 7.11 99.48 0.71 -8.96 14 5 H -0.27 -10.29 7.11 99.48 0.71 -9.58 14 6 H -0.27 -10.25 7.11 99.48 0.71 -9.55 14 7 C -0.42 -23.60 9.48 67.92 0.64 -22.96 14 8 H 0.10 5.37 5.18 -2.91 -0.02 5.35 14 9 O -0.20 -11.64 9.75 -22.66 -0.22 -11.86 14 10 C 0.15 7.28 6.65 22.62 0.15 7.43 14 11 C -0.17 -6.81 9.91 22.14 0.22 -6.59 14 12 C -0.01 -0.51 10.04 22.22 0.22 -0.29 14 13 C -0.07 -2.78 7.24 39.36 0.28 -2.50 14 14 N -0.50 -16.34 11.34 -308.23 -3.49 -19.83 14 15 C 0.21 5.40 13.13 130.53 1.71 7.11 14 16 O -0.23 -7.88 10.78 -10.35 -0.11 -7.99 14 17 C 0.05 1.93 7.43 22.87 0.17 2.10 14 18 C -0.24 -11.20 9.18 22.43 0.21 -10.99 14 19 H 0.28 14.75 8.31 -92.71 -0.77 13.98 14 20 H 0.15 5.45 8.06 -2.91 -0.02 5.43 14 21 H 0.17 4.59 8.06 -2.91 -0.02 4.57 14 22 H 0.31 3.16 8.06 -2.92 -0.02 3.14 14 23 H 0.13 6.01 5.62 -2.91 -0.02 5.99 14 Total: -1.00 -69.55 218.23 3.82 -65.73 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 1.25 Total: 10.36 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 4.08 Total: -26.90 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -3.20 Total: -72.60 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.33 Total: -19.85 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -69.55 3.82 -65.73 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259423323.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.294 kcal (2) G-P(sol) polarization free energy of solvation -69.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds