Wall clock time and date at job start Thu Apr 9 2020 14:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31816 * 119.05808 * 2 1 4 4 C 1.32472 * 120.82900 * 179.97438 * 3 2 1 5 5 C 1.38136 * 118.89419 * 359.92066 * 4 3 2 6 6 C 1.38790 * 118.68257 * 0.12112 * 5 4 3 7 7 N 1.31882 * 119.05656 * 179.97438 * 2 1 3 8 8 C 1.50994 * 108.20567 * 179.97438 * 6 5 4 9 9 N 1.48114 * 105.71335 * 342.55195 * 8 6 5 10 10 C 1.48124 * 103.93860 * 27.40183 * 9 8 6 11 11 H 1.08996 * 110.21017 * 91.75216 * 10 9 8 12 12 C 1.50698 * 110.20557 * 213.57845 * 10 9 8 13 13 H 1.08005 * 119.99819 * 117.46003 * 12 10 9 14 14 C 1.37875 * 120.00046 * 297.45344 * 12 10 9 15 15 N 1.31511 * 120.00192 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47297 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47261 * 60.00310 * 16 14 12 19 19 H 1.48500 * 109.47454 * 300.00304 * 16 14 12 20 20 H 1.08993 * 109.47413 * 270.03194 * 1 2 3 21 21 H 1.09009 * 109.46900 * 30.02967 * 1 2 3 22 22 H 1.08996 * 109.47545 * 150.01931 * 1 2 3 23 23 H 1.07998 * 120.57284 * 179.97438 * 4 3 2 24 24 H 1.09006 * 110.20006 * 223.49922 * 8 6 5 25 25 H 1.08997 * 110.27103 * 101.65139 * 8 6 5 26 26 H 1.00894 * 110.99660 * 268.00297 * 9 8 6 27 27 H 0.97001 * 119.99934 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1472 1.1522 0.0000 4 6 3.4713 1.1932 0.0005 5 6 4.1758 0.0050 0.0027 6 6 3.4682 -1.1890 0.0017 7 7 2.1475 -1.1528 0.0005 8 6 4.4616 -2.3261 0.0039 9 7 5.7507 -1.7334 -0.4213 10 6 5.6496 -0.3177 0.0026 11 1 6.0622 -0.1941 1.0039 12 6 6.3771 0.5710 -0.9730 13 1 5.8333 1.3182 -1.5320 14 6 7.7369 0.4303 -1.1520 15 7 8.3991 -0.4798 -0.4717 16 14 8.6388 1.5324 -2.3609 17 1 10.0820 1.1822 -2.3685 18 1 8.4755 2.9513 -1.9541 19 1 8.0760 1.3397 -3.7215 20 1 -0.3634 0.0006 1.0276 21 1 -0.3633 0.8898 -0.5143 22 1 -0.3634 -0.8901 -0.5135 23 1 3.9916 2.1396 0.0001 24 1 4.1517 -3.0980 -0.7006 25 1 4.5527 -2.7461 1.0056 26 1 5.8688 -1.8041 -1.4208 27 1 7.9308 -1.0519 0.1563 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261164570.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:31 Heat of formation + Delta-G solvation = 29.081044 kcal Electronic energy + Delta-G solvation = -12933.996794 eV Core-core repulsion = 10690.764921 eV Total energy + Delta-G solvation = -2243.231874 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.46720 -38.81388 -35.19373 -34.39304 -32.81101 -30.25482 -28.45643 -26.25290 -25.19646 -22.81632 -22.54270 -19.52379 -18.32981 -17.38032 -16.75207 -16.03548 -16.00905 -15.47371 -14.76515 -14.38828 -14.22796 -13.94412 -13.61481 -13.26254 -13.09568 -13.01475 -12.55717 -12.00825 -11.84514 -11.58370 -10.95840 -10.60456 -10.30147 -10.04989 -9.69620 -8.56790 -6.41129 -0.13529 -0.03527 1.58415 1.63522 1.83686 2.56461 2.62009 2.66092 3.03889 3.11909 3.47476 3.69295 3.81907 3.97782 4.31851 4.45620 4.60277 4.64454 4.69062 4.95056 4.96470 5.04827 5.41044 5.68683 5.79843 5.90310 6.19423 6.46287 6.67666 7.01425 7.45940 8.83508 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.049940 B = 0.009878 C = 0.008619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.538634 B = 2833.784044 C = 3248.014784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.284 3.716 3 N -0.528 5.528 4 C 0.157 3.843 5 C -0.213 4.213 6 C 0.120 3.880 7 N -0.518 5.518 8 C 0.092 3.908 9 N -0.650 5.650 10 C 0.230 3.770 11 H 0.032 0.968 12 C -0.630 4.630 13 H 0.048 0.952 14 C -0.006 4.006 15 N -0.914 5.914 16 Si 1.113 2.887 17 H -0.285 1.285 18 H -0.273 1.273 19 H -0.275 1.275 20 H 0.100 0.900 21 H 0.096 0.904 22 H 0.095 0.905 23 H 0.173 0.827 24 H 0.103 0.897 25 H 0.109 0.891 26 H 0.337 0.663 27 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.832 0.061 -0.265 10.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.017 3.983 3 N -0.243 5.243 4 C -0.007 4.007 5 C -0.219 4.219 6 C -0.029 4.029 7 N -0.233 5.233 8 C -0.039 4.039 9 N -0.277 5.277 10 C 0.121 3.879 11 H 0.049 0.951 12 C -0.669 4.669 13 H 0.066 0.934 14 C -0.210 4.210 15 N -0.548 5.548 16 Si 0.935 3.065 17 H -0.211 1.211 18 H -0.198 1.198 19 H -0.201 1.201 20 H 0.118 0.882 21 H 0.114 0.886 22 H 0.114 0.886 23 H 0.190 0.810 24 H 0.121 0.879 25 H 0.127 0.873 26 H 0.153 0.847 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.892 0.101 -0.323 9.898 hybrid contribution -0.966 0.095 0.232 0.998 sum -10.858 0.196 -0.091 10.860 Atomic orbital electron populations 1.20627 0.82350 1.05044 1.05007 1.24172 0.99923 0.82819 0.91425 1.68429 1.09238 1.30681 1.15918 1.22702 0.88995 0.98554 0.90439 1.23145 1.01157 0.96347 1.01240 1.23520 0.90606 0.97934 0.90853 1.67545 1.08619 1.31294 1.15858 1.21682 0.84811 0.93414 1.03947 1.63892 1.28419 1.14804 1.20608 1.18533 0.86109 0.86710 0.96544 0.95094 1.22127 0.95753 1.21580 1.27390 0.93413 1.27049 0.95777 0.98418 0.99806 1.70752 1.40508 1.19413 1.24162 0.82967 0.74979 0.74436 0.74086 1.21085 1.19847 1.20078 0.88168 0.88560 0.88619 0.80983 0.87869 0.87340 0.84738 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.62 10.32 71.23 0.73 -0.89 15 2 C 0.28 9.72 7.64 138.72 1.06 10.78 15 3 N -0.53 -19.69 10.34 -188.04 -1.94 -21.64 15 4 C 0.16 6.35 11.02 84.57 0.93 7.28 15 5 C -0.21 -9.32 5.69 -19.70 -0.11 -9.44 15 6 C 0.12 4.82 7.50 42.74 0.32 5.14 15 7 N -0.52 -19.29 10.34 -175.65 -1.82 -21.11 15 8 C 0.09 3.39 7.45 85.42 0.64 4.02 15 9 N -0.65 -28.95 6.42 -496.82 -3.19 -32.14 15 10 C 0.23 11.20 2.72 43.24 0.12 11.32 15 11 H 0.03 1.69 8.00 -2.39 -0.02 1.67 15 12 C -0.63 -33.26 8.36 25.60 0.21 -33.05 15 13 H 0.05 2.52 7.61 -2.91 -0.02 2.50 15 14 C -0.01 -0.33 5.41 84.65 0.46 0.13 15 15 N -0.91 -52.56 13.55 21.45 0.29 -52.27 15 16 Si 1.11 47.66 29.90 68.60 2.05 49.71 15 17 H -0.29 -12.35 7.11 99.48 0.71 -11.64 15 18 H -0.27 -10.99 7.11 99.48 0.71 -10.28 15 19 H -0.28 -11.13 7.11 99.48 0.71 -10.42 15 20 H 0.10 1.89 8.14 -2.39 -0.02 1.87 15 21 H 0.10 1.90 8.14 -2.38 -0.02 1.88 15 22 H 0.10 1.88 8.14 -2.39 -0.02 1.87 15 23 H 0.17 6.50 8.06 -2.91 -0.02 6.47 15 24 H 0.10 3.25 8.14 -2.38 -0.02 3.24 15 25 H 0.11 3.68 8.14 -2.39 -0.02 3.66 15 26 H 0.34 15.45 8.45 -89.70 -0.76 14.70 15 27 H 0.28 16.18 6.52 -92.71 -0.60 15.57 15 Total: -1.00 -61.44 237.32 0.35 -61.09 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.60 Total: 21.06 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 4.36 Total: -4.70 kcal Atomic # 7 Polarization: -120.50 SS G_CDS: -6.66 Total: -127.16 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.05 Total: 49.71 kcal Total: -61.44 0.35 -61.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261164570.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.169 kcal (2) G-P(sol) polarization free energy of solvation -61.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds