Wall clock time and date at job start Thu Apr 9 2020 14:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00178 * 2 1 4 4 H 1.48499 * 109.47379 * 270.00422 * 3 2 1 5 5 H 1.48496 * 109.46773 * 30.00486 * 3 2 1 6 6 H 1.48499 * 109.46894 * 150.00419 * 3 2 1 7 7 C 1.37882 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00088 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99778 * 179.97438 * 7 2 1 10 10 C 1.52991 * 109.47062 * 180.02562 * 9 7 2 11 11 H 1.09011 * 109.53706 * 304.90183 * 10 9 7 12 12 C 1.53035 * 109.50819 * 64.99843 * 10 9 7 13 13 N 1.46846 * 109.52744 * 179.12017 * 12 10 9 14 14 C 1.46844 * 111.19783 * 298.26158 * 13 12 10 15 15 C 1.53032 * 109.52527 * 61.73901 * 14 13 12 16 16 C 1.53114 * 109.28141 * 300.82107 * 15 14 13 17 17 F 1.39897 * 109.52818 * 177.55605 * 16 15 14 18 18 F 1.39898 * 109.52447 * 297.74918 * 16 15 14 19 19 H 0.97006 * 119.99806 * 359.97438 * 1 2 3 20 20 H 1.08994 * 109.47114 * 59.99877 * 9 7 2 21 21 H 1.09003 * 109.47309 * 300.00474 * 9 7 2 22 22 H 1.09008 * 109.45841 * 59.10173 * 12 10 9 23 23 H 1.09003 * 109.46290 * 299.14157 * 12 10 9 24 24 H 1.00904 * 110.99803 * 174.16413 * 13 12 10 25 25 H 1.09000 * 109.46271 * 181.75698 * 14 13 12 26 26 H 1.09008 * 109.46154 * 301.73497 * 14 13 12 27 27 H 1.09000 * 109.50025 * 60.76400 * 15 14 13 28 28 H 1.09000 * 109.50523 * 180.83925 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0023 11 1 3.5891 -3.1768 0.8401 12 6 3.6165 -3.3207 -1.3099 13 7 4.1238 -4.6987 -1.3205 14 6 5.5905 -4.7251 -1.2536 15 6 6.0544 -4.0829 0.0557 16 6 5.5479 -2.6393 0.1180 17 9 5.9217 -2.0649 1.3376 18 9 6.1012 -1.9038 -0.9356 19 1 -0.4850 0.8401 0.0004 20 1 3.8752 -0.6805 0.8888 21 1 3.8745 -0.6800 -0.8911 22 1 4.0377 -2.7721 -2.1524 23 1 2.5296 -3.3332 -1.3919 24 1 3.7896 -5.2009 -2.1294 25 1 5.9374 -5.7576 -1.2947 26 1 6.0025 -4.1697 -2.0963 27 1 5.6541 -4.6458 0.8989 28 1 7.1436 -4.0892 0.0982 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261220850.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:34 Heat of formation + Delta-G solvation = -136.028259 kcal Electronic energy + Delta-G solvation = -14140.274641 eV Core-core repulsion = 11439.193904 eV Total energy + Delta-G solvation = -2701.080737 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.96217 -47.95432 -39.09753 -35.60337 -33.58560 -32.13847 -29.17662 -25.29692 -24.56974 -22.48322 -20.94230 -19.19386 -18.35442 -17.56651 -17.15134 -16.85054 -16.26585 -16.00857 -14.84348 -14.79099 -14.63815 -14.27006 -14.22001 -13.89427 -13.53997 -13.07690 -13.03234 -12.76254 -12.37857 -12.24118 -11.95173 -11.78649 -11.36052 -10.95468 -10.79527 -9.47024 -8.32042 -6.35225 1.30788 1.33269 1.44919 2.32202 2.81793 3.01305 3.18967 3.23477 3.43077 3.55411 4.00070 4.25213 4.34299 4.50203 4.54985 4.60807 4.79625 4.86344 5.01171 5.08411 5.19536 5.36731 5.56694 5.95102 6.22855 6.48382 6.70261 7.28809 8.83570 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.043000 B = 0.011692 C = 0.010140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.012771 B = 2394.206898 C = 2760.651707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.259 1.259 7 C -0.519 4.519 8 H 0.049 0.951 9 C -0.008 4.008 10 C -0.105 4.105 11 H 0.091 0.909 12 C 0.081 3.919 13 N -0.692 5.692 14 C 0.059 3.941 15 C -0.146 4.146 16 C 0.275 3.725 17 F -0.214 7.214 18 F -0.212 7.212 19 H 0.267 0.733 20 H 0.015 0.985 21 H 0.016 0.984 22 H 0.030 0.970 23 H 0.077 0.923 24 H 0.360 0.640 25 H 0.120 0.880 26 H 0.037 0.963 27 H 0.107 0.893 28 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.024 -8.548 -2.638 15.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.184 4.184 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.184 1.184 7 C -0.557 4.557 8 H 0.067 0.933 9 C -0.046 4.046 10 C -0.124 4.124 11 H 0.109 0.891 12 C -0.049 4.049 13 N -0.326 5.326 14 C -0.070 4.070 15 C -0.184 4.184 16 C 0.239 3.761 17 F -0.195 7.195 18 F -0.193 7.193 19 H 0.076 0.924 20 H 0.033 0.967 21 H 0.034 0.966 22 H 0.048 0.952 23 H 0.095 0.905 24 H 0.180 0.820 25 H 0.138 0.862 26 H 0.055 0.945 27 H 0.126 0.874 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.821 -8.499 -1.970 15.508 hybrid contribution 0.079 1.554 -0.719 1.714 sum 12.901 -6.945 -2.689 14.896 Atomic orbital electron populations 1.70025 1.07824 1.28079 1.52356 1.25816 0.95501 1.02802 0.94286 0.85868 0.79355 0.79542 0.79232 1.19084 1.20423 1.18359 1.21237 0.90587 0.93602 1.50307 0.93296 1.19500 0.95595 0.93029 0.96455 1.21979 0.90613 0.98661 1.01165 0.89083 1.21659 1.00754 0.88240 0.94226 1.60298 1.09641 1.14065 1.48547 1.21982 0.87591 1.02692 0.94777 1.22621 1.03523 0.90000 1.02293 1.21707 0.93858 0.89856 0.70630 1.92941 1.92950 1.87372 1.46235 1.92919 1.87420 1.80535 1.58427 0.92379 0.96693 0.96579 0.95228 0.90485 0.81980 0.86180 0.94454 0.87425 0.87180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.71 13.96 21.45 0.30 -58.41 15 2 C 0.01 0.81 5.47 84.66 0.46 1.27 15 3 Si 0.94 45.57 27.47 68.60 1.88 47.45 15 4 H -0.27 -12.42 7.11 99.48 0.71 -11.72 15 5 H -0.28 -13.15 7.11 99.48 0.71 -12.44 15 6 H -0.26 -12.32 6.54 99.48 0.65 -11.67 15 7 C -0.52 -29.75 8.97 25.60 0.23 -29.52 15 8 H 0.05 3.00 7.30 -2.91 -0.02 2.98 15 9 C -0.01 -0.39 3.26 29.85 0.10 -0.29 15 10 C -0.10 -4.19 1.94 -10.74 -0.02 -4.22 15 11 H 0.09 3.77 8.14 -2.38 -0.02 3.75 15 12 C 0.08 2.88 5.52 86.33 0.48 3.36 15 13 N -0.69 -18.38 6.85 -514.01 -3.52 -21.90 15 14 C 0.06 1.27 6.44 86.32 0.56 1.82 15 15 C -0.15 -3.56 5.62 30.64 0.17 -3.39 15 16 C 0.28 9.56 1.65 30.67 0.05 9.61 15 17 F -0.21 -8.08 16.58 44.97 0.75 -7.33 15 18 F -0.21 -7.78 15.71 44.97 0.71 -7.07 15 19 H 0.27 15.56 8.31 -92.70 -0.77 14.79 15 20 H 0.01 0.76 6.81 -2.39 -0.02 0.74 15 21 H 0.02 0.79 7.32 -2.39 -0.02 0.77 15 22 H 0.03 1.07 7.88 -2.38 -0.02 1.05 15 23 H 0.08 3.12 6.98 -2.39 -0.02 3.10 15 24 H 0.36 7.73 8.90 -89.69 -0.80 6.93 15 25 H 0.12 1.76 8.14 -2.39 -0.02 1.75 15 26 H 0.04 0.83 7.87 -2.38 -0.02 0.81 15 27 H 0.11 2.48 8.14 -2.39 -0.02 2.46 15 28 H 0.11 2.13 8.14 -2.39 -0.02 2.11 15 Total: -1.00 -65.65 234.12 2.45 -63.20 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 0.31 Total: 5.42 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: 2.02 Total: -21.36 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -3.22 Total: -80.31 kcal Atomic # 9 Polarization: -15.85 SS G_CDS: 1.45 Total: -14.40 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.88 Total: 47.45 kcal Total: -65.65 2.45 -63.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261220850.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.831 kcal (2) G-P(sol) polarization free energy of solvation -65.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds