Wall clock time and date at job start Thu Apr 9 2020 14:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08995 * 110.26169 * 300.42063 * 9 7 2 11 11 C 1.54394 * 110.29558 * 178.35847 * 9 7 2 12 12 C 1.54419 * 102.44434 * 214.89363 * 11 9 7 13 13 C 1.51088 * 105.14985 * 26.15483 * 12 11 9 14 14 C 1.38606 * 131.42344 * 162.94150 * 13 12 11 15 15 N 1.32705 * 119.03726 * 179.85436 * 14 13 12 16 16 C 1.32503 * 120.73243 * 0.12755 * 15 14 13 17 17 N 1.38402 * 119.19474 * 179.89325 * 16 15 14 18 18 N 1.32457 * 121.61315 * 359.91381 * 16 15 14 19 19 C 1.32401 * 120.74608 * 359.97438 * 18 16 15 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.08995 * 110.81489 * 333.13210 * 11 9 7 22 22 H 1.09000 * 110.81072 * 96.46626 * 11 9 7 23 23 H 1.09005 * 110.30305 * 145.07310 * 12 11 9 24 24 H 1.09001 * 110.30729 * 267.13616 * 12 11 9 25 25 H 1.07997 * 120.42738 * 0.02562 * 14 13 12 26 26 H 0.96998 * 120.00641 * 180.02562 * 17 16 15 27 27 H 0.97004 * 119.99643 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6100 -2.5690 0.8735 11 6 2.2368 -3.6867 -0.0450 12 6 1.4801 -4.7187 -0.9093 13 6 0.5612 -3.9010 -1.7866 14 6 -0.1192 -4.2206 -2.9511 15 7 -0.8763 -3.2966 -3.5290 16 6 -0.9820 -2.0837 -3.0061 17 7 -1.7787 -1.1438 -3.6365 18 7 -0.3434 -1.7485 -1.8951 19 6 0.4267 -2.6233 -1.2668 20 1 -0.4850 0.8401 -0.0004 21 1 3.1739 -3.3965 -0.5201 22 1 2.4166 -4.0744 0.9577 23 1 2.1813 -5.2863 -1.5212 24 1 0.9015 -5.3911 -0.2758 25 1 -0.0359 -5.2084 -3.3797 26 1 -1.8642 -0.2522 -3.2642 27 1 -2.2516 -1.3767 -4.4508 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261237202.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:35 Heat of formation + Delta-G solvation = 34.933868 kcal Electronic energy + Delta-G solvation = -13184.082519 eV Core-core repulsion = 10941.104442 eV Total energy + Delta-G solvation = -2242.978076 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.73913 -38.01101 -35.18552 -34.13447 -33.57610 -30.30118 -28.57138 -25.87005 -24.60798 -22.60660 -21.28360 -19.00582 -18.46028 -17.71795 -16.54485 -16.29230 -16.06257 -15.32510 -14.89817 -14.58204 -13.96083 -13.57801 -13.48164 -12.80814 -12.67080 -12.40423 -12.03341 -11.83854 -11.43408 -11.33546 -11.02298 -10.55219 -10.39605 -9.41310 -8.77663 -7.95232 -6.08666 0.58754 0.67318 1.42534 1.43604 1.49798 2.48181 2.51009 3.25516 3.39642 3.59557 3.97062 4.12452 4.29032 4.43493 4.53119 4.85708 5.06489 5.19788 5.27955 5.40180 5.47331 5.70047 5.77970 5.90298 6.23591 6.36672 6.64487 6.78496 6.93694 7.55508 7.91509 9.07240 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.030171 B = 0.015215 C = 0.010784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.819031 B = 1839.847279 C = 2595.855043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.030 3.970 3 Si 0.944 3.056 4 H -0.284 1.284 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.556 4.556 8 H 0.054 0.946 9 C 0.072 3.928 10 H 0.021 0.979 11 C -0.105 4.105 12 C -0.046 4.046 13 C -0.296 4.296 14 C 0.176 3.824 15 N -0.598 5.598 16 C 0.518 3.482 17 N -0.818 5.818 18 N -0.532 5.532 19 C 0.227 3.773 20 H 0.254 0.746 21 H 0.061 0.939 22 H 0.084 0.916 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.196 0.804 26 H 0.412 0.588 27 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.049 -6.796 -4.318 8.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.175 4.175 3 Si 0.770 3.230 4 H -0.210 1.210 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.594 4.594 8 H 0.072 0.928 9 C 0.053 3.947 10 H 0.038 0.962 11 C -0.143 4.143 12 C -0.084 4.084 13 C -0.304 4.304 14 C 0.012 3.988 15 N -0.323 5.323 16 C 0.159 3.841 17 N -0.369 5.369 18 N -0.252 5.252 19 C 0.077 3.923 20 H 0.063 0.937 21 H 0.079 0.921 22 H 0.103 0.897 23 H 0.111 0.889 24 H 0.105 0.895 25 H 0.213 0.787 26 H 0.242 0.758 27 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -0.822 -5.992 -4.771 7.703 hybrid contribution 0.411 1.077 0.209 1.171 sum -0.411 -4.915 -4.562 6.719 Atomic orbital electron populations 1.70179 1.06536 1.26211 1.45883 1.25629 0.95530 1.01641 0.94701 0.85873 0.78546 0.80262 0.78305 1.20968 1.21166 1.19404 1.21166 0.92557 0.91059 1.54626 0.92752 1.18438 0.92114 0.95283 0.88884 0.96174 1.22328 0.97546 0.94147 1.00275 1.20685 0.95822 0.96138 0.95745 1.22421 1.07493 0.99151 1.01314 1.22849 0.88039 0.98190 0.89727 1.68029 1.25765 1.02314 1.36171 1.20020 0.89547 0.87060 0.87498 1.41462 1.51841 1.13170 1.30447 1.67620 1.11733 1.38043 1.07832 1.23037 0.86506 0.87424 0.95327 0.93701 0.92060 0.89745 0.88866 0.89480 0.78682 0.75767 0.75092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.88 11.07 21.45 0.24 -49.64 15 2 C 0.03 1.69 5.20 84.66 0.44 2.13 15 3 Si 0.94 44.63 29.54 68.60 2.03 46.66 15 4 H -0.28 -13.46 7.11 99.48 0.71 -12.75 15 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 15 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 7 C -0.56 -30.97 8.52 25.60 0.22 -30.75 15 8 H 0.05 2.96 7.62 -2.91 -0.02 2.94 15 9 C 0.07 3.62 2.79 -11.65 -0.03 3.59 15 10 H 0.02 1.13 8.14 -2.39 -0.02 1.11 15 11 C -0.10 -3.99 6.57 31.55 0.21 -3.78 15 12 C -0.05 -1.46 6.77 30.45 0.21 -1.25 15 13 C -0.30 -11.87 6.20 -19.57 -0.12 -11.99 15 14 C 0.18 6.36 11.32 84.65 0.96 7.32 15 15 N -0.60 -24.16 10.48 -197.72 -2.07 -26.24 15 16 C 0.52 23.11 8.67 261.50 2.27 25.38 15 17 N -0.82 -29.04 9.07 -59.77 -0.54 -29.58 15 18 N -0.53 -27.67 8.27 -185.50 -1.53 -29.20 15 19 C 0.23 11.35 6.39 42.72 0.27 11.63 15 20 H 0.25 14.30 8.31 -92.70 -0.77 13.53 15 21 H 0.06 2.34 7.78 -2.39 -0.02 2.32 15 22 H 0.08 2.79 8.14 -2.39 -0.02 2.77 15 23 H 0.09 2.37 8.14 -2.38 -0.02 2.35 15 24 H 0.09 2.41 8.14 -2.39 -0.02 2.39 15 25 H 0.20 4.99 8.06 -2.91 -0.02 4.96 15 26 H 0.41 14.33 8.94 -92.71 -0.83 13.50 15 27 H 0.42 11.80 8.94 -92.71 -0.83 10.97 15 Total: -1.00 -67.79 234.38 2.08 -65.71 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -0.45 Total: 20.02 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 4.42 Total: 2.27 kcal Atomic # 7 Polarization: -130.75 SS G_CDS: -3.91 Total: -134.66 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -67.79 2.08 -65.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261237202.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.643 kcal (2) G-P(sol) polarization free energy of solvation -67.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds