Wall clock time and date at job start Thu Apr 9 2020 14:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99984 * 2 1 4 4 H 1.48500 * 109.47232 * 270.00135 * 3 2 1 5 5 H 1.48502 * 109.47028 * 29.99609 * 3 2 1 6 6 H 1.48495 * 109.47340 * 149.99302 * 3 2 1 7 7 C 1.37876 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99525 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00292 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47072 * 179.97438 * 9 7 2 11 11 N 1.32013 * 119.58107 * 269.97518 * 10 9 7 12 12 N 1.28712 * 121.37856 * 180.02562 * 11 10 9 13 13 C 1.32137 * 120.46368 * 0.02576 * 12 11 10 14 14 C 1.38811 * 119.01914 * 359.95826 * 13 12 11 15 15 N 1.32027 * 119.58206 * 89.99872 * 10 9 7 16 16 C 1.51109 * 109.83683 * 180.02562 * 14 13 12 17 17 C 1.54402 * 105.16869 * 342.94915 * 16 14 13 18 18 C 1.51177 * 131.39274 * 180.02562 * 13 12 11 19 19 H 0.97005 * 120.00068 * 0.02562 * 1 2 3 20 20 H 1.09006 * 109.47078 * 59.99631 * 9 7 2 21 21 H 1.08997 * 109.46943 * 299.99762 * 9 7 2 22 22 H 1.09002 * 110.30296 * 224.02672 * 16 14 13 23 23 H 1.08997 * 110.38990 * 101.91930 * 16 14 13 24 24 H 1.09006 * 110.80764 * 267.94289 * 17 16 14 25 25 H 1.09003 * 110.97154 * 144.51110 * 17 16 14 26 26 H 1.09002 * 110.29952 * 78.07317 * 18 13 12 27 27 H 1.09002 * 110.30136 * 316.02999 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2304 -3.6445 0.0005 11 7 2.6535 -4.1402 -1.1475 12 7 3.4892 -5.1183 -1.1879 13 6 3.9471 -5.6548 -0.0705 14 6 3.5143 -5.1472 1.1468 15 7 2.6540 -4.1399 1.1487 16 6 4.1641 -5.9075 2.2796 17 6 4.6988 -7.2070 1.6396 18 6 4.9170 -6.7893 0.1694 19 1 -0.4850 0.8401 -0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6241 -2.5567 0.8903 22 1 3.4288 -6.1401 3.0498 23 1 4.9849 -5.3291 2.7035 24 1 3.9601 -8.0055 1.7096 25 1 5.6392 -7.5102 2.0998 26 1 5.9417 -6.4485 0.0213 27 1 4.6963 -7.6229 -0.4973 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261255454.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:38 Heat of formation + Delta-G solvation = 57.389774 kcal Electronic energy + Delta-G solvation = -12588.274767 eV Core-core repulsion = 10346.270452 eV Total energy + Delta-G solvation = -2242.004315 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.48298 -37.10984 -34.60396 -33.12946 -31.00623 -28.99606 -27.37575 -24.83595 -23.79207 -21.39080 -20.84434 -18.38866 -16.62623 -16.03287 -15.12223 -14.74633 -14.36920 -14.17626 -13.16327 -13.07967 -12.31352 -12.28159 -11.72396 -11.43059 -11.32850 -11.31157 -11.10061 -10.73281 -10.72902 -10.62282 -9.95472 -9.66426 -8.85109 -8.58199 -8.45351 -6.12784 -4.16469 1.09485 1.34240 3.29370 3.34600 3.38707 3.87527 3.96160 4.04991 4.41365 4.56557 4.64255 4.80733 4.81613 5.24105 5.42534 5.47810 5.54391 5.63048 5.74133 5.91408 5.95185 6.02704 6.62077 7.29445 7.36316 7.68131 7.79843 8.10996 8.82377 9.16046 9.46073 10.98167 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.057329 B = 0.007709 C = 0.007548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.290914 B = 3631.410020 C = 3708.583499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.082 3.918 10 C 0.303 3.697 11 N -0.281 5.281 12 N -0.191 5.191 13 C -0.034 4.034 14 C 0.132 3.868 15 N -0.462 5.462 16 C -0.071 4.071 17 C -0.117 4.117 18 C -0.056 4.056 19 H 0.265 0.735 20 H 0.055 0.945 21 H 0.053 0.947 22 H 0.093 0.907 23 H 0.099 0.901 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.580 -12.577 4.329 15.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.042 3.958 10 C 0.037 3.963 11 N -0.127 5.127 12 N -0.040 5.040 13 C -0.184 4.184 14 C -0.027 4.027 15 N -0.183 5.183 16 C -0.110 4.110 17 C -0.155 4.155 18 C -0.096 4.096 19 H 0.075 0.925 20 H 0.073 0.927 21 H 0.071 0.929 22 H 0.112 0.888 23 H 0.117 0.883 24 H 0.097 0.903 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.986 -11.963 3.394 14.779 hybrid contribution 0.719 0.702 0.706 1.228 sum 8.705 -11.260 4.100 14.812 Atomic orbital electron populations 1.69938 1.05975 1.27227 1.49646 1.24921 0.94970 0.99247 0.94717 0.86405 0.79657 0.82569 0.78307 1.20351 1.20897 1.19886 1.20736 0.92762 0.89142 1.52349 0.92799 1.18299 0.90976 0.86281 1.00201 1.25927 0.93116 0.93860 0.83416 1.73819 1.07647 1.04970 1.26259 1.73155 1.02904 1.02429 1.25498 1.23967 1.00590 1.00731 0.93110 1.23142 0.91223 0.91287 0.97019 1.68394 1.09783 1.08316 1.31796 1.21000 1.00212 0.94704 0.95060 1.22363 1.02208 0.96669 0.94275 1.20766 0.97150 0.94490 0.97162 0.92499 0.92745 0.92895 0.88831 0.88319 0.90306 0.89221 0.89084 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.48 15 2 C 0.06 1.83 5.46 -17.82 -0.10 1.73 15 3 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 15 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 15 7 C -0.51 -14.81 9.09 -34.44 -0.31 -15.12 15 8 H 0.05 1.58 7.74 -52.49 -0.41 1.17 15 9 C 0.08 2.22 5.44 -29.04 -0.16 2.06 15 10 C 0.30 7.46 6.90 -156.81 -1.08 6.37 15 11 N -0.28 -6.78 11.48 32.42 0.37 -6.41 15 12 N -0.19 -4.04 11.62 33.78 0.39 -3.64 15 13 C -0.03 -0.59 7.43 -82.02 -0.61 -1.20 15 14 C 0.13 2.33 7.37 -81.91 -0.60 1.73 15 15 N -0.46 -10.32 10.45 -6.69 -0.07 -10.39 15 16 C -0.07 -0.81 6.76 -26.95 -0.18 -1.00 15 17 C -0.12 -0.97 7.08 -25.27 -0.18 -1.15 15 18 C -0.06 -0.61 6.76 -26.92 -0.18 -0.80 15 19 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 20 H 0.05 1.53 8.14 -51.93 -0.42 1.10 15 21 H 0.05 1.47 8.14 -51.93 -0.42 1.05 15 22 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15 23 H 0.10 0.99 8.14 -51.93 -0.42 0.57 15 24 H 0.08 0.59 8.14 -51.93 -0.42 0.17 15 25 H 0.09 0.50 8.14 -51.93 -0.42 0.08 15 26 H 0.09 0.87 8.14 -51.93 -0.42 0.44 15 27 H 0.09 0.85 8.14 -51.93 -0.42 0.42 15 LS Contribution 241.18 15.07 3.63 3.63 Total: -1.00 -32.67 241.18 -6.29 -38.95 By element: Atomic # 1 Polarization: -3.21 SS G_CDS: -2.92 Total: -6.14 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -3.41 Total: -7.37 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 1.43 Total: -45.92 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -32.67 -6.29 -38.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261255454.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.343 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds