Wall clock time and date at job start Thu Apr 9 2020 14:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00414 * 2 1 4 4 H 1.48495 * 109.47579 * 240.00180 * 3 2 1 5 5 H 1.48506 * 109.47031 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46988 * 119.99718 * 3 2 1 7 7 C 1.37881 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00239 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99634 * 0.02562 * 7 2 1 10 10 F 1.39893 * 109.47490 * 60.00138 * 9 7 2 11 11 F 1.39903 * 109.47316 * 299.99529 * 9 7 2 12 12 C 1.53008 * 109.46830 * 179.97438 * 9 7 2 13 13 H 1.09000 * 109.53252 * 305.09854 * 12 9 7 14 14 C 1.53120 * 109.50107 * 184.99851 * 12 9 7 15 15 C 1.53123 * 109.21163 * 182.43700 * 14 12 9 16 16 C 1.53039 * 109.27546 * 57.62218 * 15 14 12 17 17 N 1.46842 * 109.52666 * 300.81951 * 16 15 14 18 18 C 1.46848 * 111.19688 * 61.74516 * 17 16 15 19 19 H 0.96998 * 119.99696 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.52427 * 62.49974 * 14 12 9 21 21 H 1.08995 * 109.52208 * 302.37293 * 14 12 9 22 22 H 1.08999 * 109.50194 * 177.56161 * 15 14 12 23 23 H 1.09002 * 109.50248 * 297.64565 * 15 14 12 24 24 H 1.08997 * 109.46051 * 60.83848 * 16 15 14 25 25 H 1.09004 * 109.45969 * 180.80356 * 16 15 14 26 26 H 1.00895 * 111.00433 * 185.84215 * 17 16 15 27 27 H 1.08999 * 109.46555 * 58.27446 * 18 17 16 28 28 H 1.09000 * 109.46248 * 178.24415 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 9 0.4471 -2.5725 -1.1443 11 9 0.4462 -2.5740 1.1403 12 6 2.2452 -3.6621 -0.0027 13 1 2.9309 -3.5546 -0.8431 14 6 1.4844 -4.9849 -0.1297 15 6 2.4800 -6.1466 -0.0688 16 6 3.2652 -6.0709 1.2426 17 7 3.9769 -4.7885 1.3152 18 6 3.0384 -3.6592 1.3061 19 1 -0.4849 0.8401 -0.0004 20 1 0.9533 -5.0098 -1.0812 21 1 0.7700 -5.0742 0.6887 22 1 1.9394 -7.0920 -0.1153 23 1 3.1692 -6.0797 -0.9107 24 1 2.5764 -6.1521 2.0834 25 1 3.9850 -6.8885 1.2826 26 1 4.5771 -4.7534 2.1255 27 1 2.3507 -3.7516 2.1467 28 1 3.5934 -2.7250 1.3923 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261256893.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:40 Heat of formation + Delta-G solvation = -142.645808 kcal Electronic energy + Delta-G solvation = -14250.388328 eV Core-core repulsion = 11549.020632 eV Total energy + Delta-G solvation = -2701.367695 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.97248 -46.99624 -39.36431 -34.98358 -33.37341 -32.37764 -28.65309 -25.25703 -24.60811 -22.38150 -20.53876 -19.18614 -17.97854 -17.46808 -16.83575 -16.12252 -15.81241 -15.42526 -14.99524 -14.73226 -14.10098 -13.86828 -13.79482 -13.56613 -13.43405 -13.04194 -12.80750 -12.45645 -12.25511 -12.02425 -11.76999 -11.71928 -11.27787 -10.89833 -10.56404 -9.40069 -8.35175 -6.70237 1.38987 1.43609 1.51937 2.30602 2.94788 3.17586 3.69027 3.80662 3.91835 4.11458 4.26901 4.44963 4.61757 4.65474 4.72923 4.87737 4.94324 5.02509 5.09687 5.22069 5.34976 5.50793 5.55942 5.63114 6.03663 6.43993 6.56613 7.15374 8.70738 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.049140 B = 0.011607 C = 0.010309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.665607 B = 2411.808324 C = 2715.390625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.025 3.975 3 Si 0.983 3.017 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.609 4.609 8 H 0.090 0.910 9 C 0.382 3.618 10 F -0.244 7.244 11 F -0.242 7.242 12 C -0.103 4.103 13 H 0.084 0.916 14 C -0.121 4.121 15 C -0.107 4.107 16 C 0.055 3.945 17 N -0.689 5.689 18 C 0.084 3.916 19 H 0.271 0.729 20 H 0.056 0.944 21 H 0.047 0.953 22 H 0.088 0.912 23 H 0.071 0.929 24 H 0.027 0.973 25 H 0.102 0.898 26 H 0.355 0.645 27 H 0.020 0.980 28 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.058 -8.587 2.275 11.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.180 4.180 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.183 1.183 7 C -0.645 4.645 8 H 0.108 0.892 9 C 0.346 3.654 10 F -0.225 7.225 11 F -0.223 7.223 12 C -0.122 4.122 13 H 0.102 0.898 14 C -0.159 4.159 15 C -0.145 4.145 16 C -0.074 4.074 17 N -0.321 5.321 18 C -0.046 4.046 19 H 0.080 0.920 20 H 0.075 0.925 21 H 0.066 0.934 22 H 0.107 0.893 23 H 0.090 0.910 24 H 0.045 0.955 25 H 0.120 0.880 26 H 0.174 0.826 27 H 0.038 0.962 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.953 -8.478 1.611 11.083 hybrid contribution -0.775 0.985 0.791 1.483 sum 6.178 -7.493 2.403 10.004 Atomic orbital electron populations 1.70178 1.08253 1.28912 1.46276 1.26212 0.95781 1.04410 0.91582 0.85242 0.78170 0.76291 0.79782 1.18516 1.20526 1.18271 1.22000 0.94745 0.90250 1.57553 0.89193 1.18943 0.80603 0.96605 0.69284 1.92790 1.78127 1.97612 1.53992 1.92786 1.78087 1.97603 1.53855 1.21876 0.96498 0.93423 1.00430 0.89754 1.21631 0.98267 0.94719 1.01289 1.21559 0.97184 0.97212 0.98520 1.22042 0.97122 0.91800 0.96465 1.60235 1.22183 1.01884 1.47816 1.21556 0.93930 0.94754 0.94353 0.91967 0.92482 0.93383 0.89303 0.91043 0.95510 0.87964 0.82601 0.96212 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.12 12.62 21.45 0.27 -54.85 15 2 C 0.02 1.39 5.39 84.66 0.46 1.85 15 3 Si 0.98 43.14 29.54 68.60 2.03 45.17 15 4 H -0.26 -10.92 7.11 99.48 0.71 -10.21 15 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 15 7 C -0.61 -34.16 7.92 25.60 0.20 -33.96 15 8 H 0.09 4.71 7.07 -2.91 -0.02 4.68 15 9 C 0.38 20.77 1.12 29.85 0.03 20.80 15 10 F -0.24 -14.41 15.95 44.97 0.72 -13.69 15 11 F -0.24 -14.09 15.52 44.97 0.70 -13.39 15 12 C -0.10 -4.41 1.98 -10.73 -0.02 -4.43 15 13 H 0.08 3.66 8.14 -2.39 -0.02 3.64 15 14 C -0.12 -4.50 5.01 30.68 0.15 -4.34 15 15 C -0.11 -2.92 6.10 30.65 0.19 -2.73 15 16 C 0.05 1.37 6.55 86.33 0.57 1.93 15 17 N -0.69 -19.96 6.85 -513.99 -3.52 -23.48 15 18 C 0.08 3.16 5.48 86.33 0.47 3.64 15 19 H 0.27 15.46 8.31 -92.71 -0.77 14.69 15 20 H 0.06 2.18 7.77 -2.39 -0.02 2.16 15 21 H 0.05 1.87 7.88 -2.39 -0.02 1.85 15 22 H 0.09 1.96 8.14 -2.39 -0.02 1.94 15 23 H 0.07 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.03 0.68 8.14 -2.39 -0.02 0.66 15 25 H 0.10 1.92 8.14 -2.38 -0.02 1.91 15 26 H 0.35 8.35 8.90 -89.70 -0.80 7.55 15 27 H 0.02 0.79 7.66 -2.39 -0.02 0.77 15 28 H 0.08 3.01 6.99 -2.39 -0.02 2.99 15 Total: -1.00 -66.85 236.63 2.60 -64.24 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.36 Total: 13.25 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 2.05 Total: -17.25 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -3.25 Total: -78.32 kcal Atomic # 9 Polarization: -28.50 SS G_CDS: 1.42 Total: -27.08 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -66.85 2.60 -64.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261256893.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.402 kcal (2) G-P(sol) polarization free energy of solvation -66.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds