Wall clock time and date at job start Thu Apr 9 2020 14:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86798 * 119.99657 * 2 1 4 4 H 1.48510 * 109.46922 * 269.99426 * 3 2 1 5 5 H 1.48488 * 109.47459 * 30.00060 * 3 2 1 6 6 H 1.48499 * 109.46902 * 150.00123 * 3 2 1 7 7 C 1.40059 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99562 * 179.97438 * 7 2 1 9 9 C 1.41574 * 119.99785 * 0.27958 * 7 2 1 10 10 N 1.33414 * 119.21388 * 179.72204 * 9 7 2 11 11 C 1.32209 * 120.91219 * 179.97438 * 10 9 7 12 12 C 1.38512 * 119.20751 * 359.97438 * 11 10 9 13 13 C 1.40076 * 118.76535 * 359.97438 * 12 11 10 14 14 N 1.38523 * 120.46978 * 180.02562 * 13 12 11 15 15 N 1.32572 * 119.05644 * 359.78282 * 13 12 11 16 16 C 1.51096 * 109.86086 * 180.02562 * 12 11 10 17 17 C 1.54409 * 105.15177 * 17.06343 * 16 12 11 18 18 C 1.51221 * 131.12098 * 179.97438 * 11 10 9 19 19 H 0.96996 * 120.00343 * 0.02562 * 1 2 3 20 20 H 0.97001 * 120.00431 * 359.97438 * 14 13 12 21 21 H 0.97007 * 120.00083 * 179.97438 * 14 13 12 22 22 H 1.08995 * 110.30710 * 135.97763 * 16 12 11 23 23 H 1.08995 * 110.30825 * 258.04696 * 16 12 11 24 24 H 1.09002 * 110.81347 * 92.05874 * 17 16 12 25 25 H 1.08997 * 110.81097 * 215.38224 * 17 16 12 26 26 H 1.09004 * 110.29474 * 281.83342 * 18 11 10 27 27 H 1.09005 * 110.29405 * 43.95979 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4884 2.0464 -1.4002 5 1 1.4383 2.6526 0.7000 6 1 3.5384 1.4402 0.7000 7 6 2.0072 -1.2130 0.0005 8 1 3.0872 -1.2129 0.0001 9 6 1.2993 -2.4390 -0.0049 10 7 1.9821 -3.5851 -0.0099 11 6 1.3553 -4.7492 -0.0146 12 6 -0.0297 -4.7710 -0.0136 13 6 -0.7230 -3.5539 -0.0072 14 7 -2.1081 -3.5346 -0.0055 15 7 -0.0348 -2.4209 0.0021 16 6 -0.5205 -6.2000 -0.0189 17 6 0.6962 -7.0463 0.4142 18 6 1.8867 -6.1649 -0.0212 19 1 -0.4850 0.8400 -0.0004 20 1 -2.6049 -4.3677 -0.0092 21 1 -2.5814 -2.6878 -0.0007 22 1 -1.3380 -6.3218 0.6916 23 1 -0.8444 -6.4850 -1.0199 24 1 0.6994 -7.1958 1.4939 25 1 0.7078 -8.0032 -0.1077 26 1 2.2151 -6.4408 -1.0233 27 1 2.7091 -6.2633 0.6874 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261264419.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:44 Heat of formation + Delta-G solvation = 36.851684 kcal Electronic energy + Delta-G solvation = -12948.825295 eV Core-core repulsion = 10705.930381 eV Total energy + Delta-G solvation = -2242.894914 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.33411 -35.74551 -34.29230 -33.05582 -29.92415 -28.39166 -27.45409 -25.34598 -21.73595 -20.87322 -19.71364 -17.55974 -16.60132 -15.59611 -15.00683 -14.69580 -14.22150 -13.15811 -12.90945 -12.77891 -12.25860 -11.78012 -11.64303 -11.25719 -11.04003 -10.61538 -10.58171 -10.54002 -10.19231 -10.15925 -9.19475 -8.80083 -7.89239 -7.19363 -6.94295 -6.42383 -4.60760 2.76019 3.10791 3.13143 3.16332 3.28995 3.96196 4.73596 4.76408 5.16154 5.39962 5.52594 5.88341 5.94279 6.10557 6.28739 6.30750 6.49558 6.52204 6.60223 6.73261 7.00744 7.18720 7.37911 7.59838 8.19205 8.24242 8.57136 8.72447 8.87698 9.38412 10.26913 10.50012 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.052579 B = 0.010250 C = 0.008665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.400715 B = 2730.932816 C = 3230.431449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.068 3.932 3 Si 0.917 3.083 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.406 4.406 8 H 0.092 0.908 9 C 0.430 3.570 10 N -0.614 5.614 11 C 0.197 3.803 12 C -0.405 4.405 13 C 0.450 3.550 14 N -0.858 5.858 15 N -0.556 5.556 16 C -0.036 4.036 17 C -0.116 4.116 18 C -0.064 4.064 19 H 0.271 0.729 20 H 0.392 0.608 21 H 0.394 0.606 22 H 0.045 0.955 23 H 0.048 0.952 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.377 -5.849 0.104 6.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.157 4.157 3 Si 0.741 3.259 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.442 4.442 8 H 0.110 0.890 9 C 0.191 3.809 10 N -0.336 5.336 11 C 0.045 3.955 12 C -0.419 4.419 13 C 0.201 3.799 14 N -0.403 5.403 15 N -0.283 5.283 16 C -0.074 4.074 17 C -0.154 4.154 18 C -0.102 4.102 19 H 0.082 0.918 20 H 0.219 0.781 21 H 0.223 0.777 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.959 -4.753 0.119 5.142 hybrid contribution -0.648 -0.027 -0.035 0.650 sum -2.607 -4.781 0.084 5.446 Atomic orbital electron populations 1.70156 1.07249 1.27613 1.28772 1.26059 0.94963 1.01171 0.93552 0.86183 0.80391 0.80161 0.79211 1.19391 1.20194 1.18381 1.19279 0.94557 0.87483 1.42896 0.89031 1.19581 0.84342 0.90212 0.86810 1.67965 1.41307 0.97228 1.27115 1.21296 0.90536 0.93417 0.90213 1.20676 0.96598 0.93714 1.30881 1.18391 0.85168 0.89054 0.87280 1.41972 1.03345 1.09864 1.85148 1.69035 1.08764 1.23413 1.27117 1.20261 0.96365 0.91989 0.98831 1.22222 0.95336 0.97291 1.00525 1.20785 0.97689 0.90306 1.01399 0.91779 0.78095 0.77741 0.93612 0.93385 0.91786 0.91628 0.90694 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.21 11.42 55.55 0.63 -18.58 15 2 C 0.07 1.79 5.50 -17.35 -0.10 1.69 15 3 Si 0.92 19.05 29.56 -169.99 -5.02 14.03 15 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 15 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 15 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 15 7 C -0.41 -11.57 9.37 -37.63 -0.35 -11.92 15 8 H 0.09 2.51 7.85 -52.49 -0.41 2.10 15 9 C 0.43 12.71 7.37 -158.37 -1.17 11.54 15 10 N -0.61 -17.26 10.35 -8.81 -0.09 -17.35 15 11 C 0.20 4.81 7.37 -82.07 -0.60 4.21 15 12 C -0.41 -9.38 6.18 -103.64 -0.64 -10.02 15 13 C 0.45 11.21 7.82 -154.98 -1.21 9.99 15 14 N -0.86 -16.84 9.06 31.25 0.28 -16.56 15 15 N -0.56 -15.89 7.91 -11.89 -0.09 -15.98 15 16 C -0.04 -0.63 6.39 -26.95 -0.17 -0.81 15 17 C -0.12 -1.80 7.08 -25.26 -0.18 -1.97 15 18 C -0.06 -1.17 6.76 -26.90 -0.18 -1.35 15 19 H 0.27 6.55 8.29 -40.82 -0.34 6.21 15 20 H 0.39 6.28 8.51 -40.82 -0.35 5.94 15 21 H 0.39 7.50 8.95 -40.82 -0.37 7.14 15 22 H 0.05 0.74 8.14 -51.93 -0.42 0.31 15 23 H 0.05 0.80 8.14 -51.93 -0.42 0.37 15 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 15 26 H 0.07 1.28 8.14 -51.93 -0.42 0.85 15 27 H 0.07 1.23 8.14 -51.93 -0.42 0.80 15 LS Contribution 235.91 15.07 3.56 3.56 Total: -1.00 -31.93 235.91 -8.14 -40.07 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -2.80 Total: 9.45 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -4.60 Total: 1.36 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: 0.73 Total: -68.47 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -31.93 -8.14 -40.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261264419.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.921 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds