Wall clock time and date at job start Thu Apr 9 2020 14:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00114 * 2 1 4 4 H 1.48504 * 109.47401 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47165 * 299.99607 * 3 2 1 6 6 H 1.48500 * 109.47593 * 59.99591 * 3 2 1 7 7 C 1.37876 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00276 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99960 * 0.02562 * 7 2 1 10 10 F 1.39896 * 109.46890 * 59.99606 * 9 7 2 11 11 F 1.39907 * 109.46933 * 300.00161 * 9 7 2 12 12 C 1.52993 * 109.47318 * 179.97438 * 9 7 2 13 13 C 1.53120 * 109.52343 * 184.99675 * 12 9 7 14 14 C 1.53042 * 109.27821 * 182.43872 * 13 12 9 15 15 N 1.46848 * 109.52160 * 59.18425 * 14 13 12 16 16 C 1.46847 * 111.19556 * 298.25623 * 15 14 13 17 17 C 1.53034 * 109.52616 * 61.74332 * 16 15 14 18 18 H 0.97003 * 119.99860 * 0.02562 * 1 2 3 19 19 H 1.08996 * 109.57542 * 305.16002 * 12 9 7 20 20 H 1.08997 * 109.49895 * 62.50324 * 13 12 9 21 21 H 1.08998 * 109.50437 * 302.38327 * 13 12 9 22 22 H 1.08995 * 109.46577 * 299.16647 * 14 13 12 23 23 H 1.08994 * 109.45929 * 179.19867 * 14 13 12 24 24 H 1.00901 * 111.00066 * 62.35005 * 15 14 13 25 25 H 1.09000 * 109.46087 * 181.75730 * 16 15 14 26 26 H 1.09004 * 109.46240 * 301.72671 * 16 15 14 27 27 H 1.08998 * 109.50577 * 180.88107 * 17 16 15 28 28 H 1.09000 * 109.50061 * 60.76065 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 9 0.4471 -2.5734 -1.1420 11 9 0.4462 -2.5730 1.1426 12 6 2.2452 -3.6621 0.0005 13 6 1.4850 -4.9852 -0.1252 14 6 2.4792 -6.1471 -0.0634 15 7 3.2097 -6.1007 1.2097 16 6 3.9850 -4.8596 1.3320 17 6 3.0359 -3.6594 1.3118 18 1 -0.4850 0.8401 -0.0004 19 1 2.9320 -3.5553 -0.8391 20 1 0.9541 -5.0108 -1.0768 21 1 0.7706 -5.0737 0.6933 22 1 3.1848 -6.0656 -0.8901 23 1 1.9396 -7.0911 -0.1383 24 1 2.5815 -6.2131 1.9913 25 1 4.5392 -4.8686 2.2706 26 1 4.6836 -4.7842 0.4986 27 1 3.6129 -2.7377 1.3869 28 1 2.3459 -3.7270 2.1529 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261267254.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:46 Heat of formation + Delta-G solvation = -123.942456 kcal Electronic energy + Delta-G solvation = -14263.792710 eV Core-core repulsion = 11563.236053 eV Total energy + Delta-G solvation = -2700.556657 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -46.83015 -44.81969 -38.21069 -32.99528 -31.80546 -30.45459 -26.96162 -23.91851 -22.41588 -21.13575 -19.42792 -17.13948 -15.94735 -15.51038 -14.88833 -14.40293 -14.31602 -13.85126 -13.72814 -12.68054 -12.59379 -11.91364 -11.82240 -11.69915 -11.48360 -11.25316 -11.03798 -10.99047 -10.71535 -10.39495 -10.12499 -10.06066 -9.80984 -8.83534 -8.82216 -8.01443 -6.25439 -4.51583 3.19027 3.25775 3.30009 4.22098 4.58620 5.04762 5.14245 5.25754 5.35058 5.52235 5.77109 5.82061 5.86455 6.08412 6.15304 6.28599 6.35240 6.46116 6.66439 6.79694 6.90931 7.27039 7.53339 7.59288 7.60901 7.67088 8.55531 9.28714 10.79436 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.049599 B = 0.011544 C = 0.010291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.397694 B = 2424.889872 C = 2720.191124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.083 3.917 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.590 4.590 8 H 0.078 0.922 9 C 0.402 3.598 10 F -0.227 7.227 11 F -0.226 7.226 12 C -0.113 4.113 13 C -0.158 4.158 14 C 0.060 3.940 15 N -0.689 5.689 16 C 0.056 3.944 17 C -0.141 4.141 18 H 0.268 0.732 19 H 0.081 0.919 20 H 0.069 0.931 21 H 0.063 0.937 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.338 0.662 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.129 -7.254 1.318 8.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.126 4.126 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.627 4.627 8 H 0.096 0.904 9 C 0.366 3.634 10 F -0.209 7.209 11 F -0.208 7.208 12 C -0.133 4.133 13 C -0.197 4.197 14 C -0.070 4.070 15 N -0.317 5.317 16 C -0.073 4.073 17 C -0.180 4.180 18 H 0.078 0.922 19 H 0.099 0.901 20 H 0.088 0.912 21 H 0.081 0.919 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.155 0.845 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.449 -7.532 1.078 9.358 hybrid contribution -0.603 1.665 0.098 1.773 sum 4.846 -5.867 1.176 7.700 Atomic orbital electron populations 1.70059 1.06294 1.27558 1.44973 1.25149 0.94922 1.00153 0.92383 0.86304 0.80094 0.82310 0.77936 1.19225 1.20476 1.20474 1.21590 0.93959 0.89374 1.57761 0.90361 1.18396 0.80380 0.94322 0.70316 1.92839 1.77472 1.97429 1.53112 1.92831 1.77404 1.97432 1.53087 1.22010 0.97954 0.94148 0.99150 1.22304 0.98857 0.95646 1.02863 1.21980 0.95308 0.97229 0.92441 1.60771 1.29876 1.36445 1.04654 1.22053 0.95917 0.87577 1.01786 1.22123 0.98911 0.99674 0.97282 0.92215 0.90110 0.91230 0.91863 0.91196 0.91215 0.84540 0.91098 0.91258 0.90224 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.66 12.62 55.43 0.70 -24.96 15 2 C 0.08 2.34 5.38 -17.82 -0.10 2.24 15 3 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 15 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 7 C -0.59 -16.34 7.94 -34.44 -0.27 -16.62 15 8 H 0.08 2.05 7.08 -52.49 -0.37 1.68 15 9 C 0.40 10.60 1.12 -27.88 -0.03 10.57 15 10 F -0.23 -6.48 15.95 2.25 0.04 -6.45 15 11 F -0.23 -6.37 15.49 2.25 0.03 -6.34 15 12 C -0.11 -2.34 1.89 -90.50 -0.17 -2.51 15 13 C -0.16 -2.83 5.09 -26.65 -0.14 -2.96 15 14 C 0.06 0.87 6.55 -3.83 -0.03 0.85 15 15 N -0.69 -9.84 6.87 -113.82 -0.78 -10.62 15 16 C 0.06 0.83 6.55 -3.84 -0.03 0.80 15 17 C -0.14 -2.57 5.00 -26.65 -0.13 -2.71 15 18 H 0.27 7.46 8.31 -40.82 -0.34 7.12 15 19 H 0.08 1.66 8.14 -51.93 -0.42 1.23 15 20 H 0.07 1.28 7.77 -51.93 -0.40 0.87 15 21 H 0.06 1.18 7.88 -51.93 -0.41 0.77 15 22 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 24 H 0.34 4.55 8.86 -39.29 -0.35 4.20 15 25 H 0.07 0.93 8.14 -51.93 -0.42 0.50 15 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 27 H 0.08 1.53 7.05 -51.93 -0.37 1.16 15 28 H 0.06 1.24 7.61 -51.93 -0.40 0.84 15 LS Contribution 236.59 15.07 3.57 3.57 Total: -1.00 -30.76 236.59 -5.90 -36.66 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -3.54 Total: 2.44 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -0.89 Total: -10.34 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.08 Total: -35.58 kcal Atomic # 9 Polarization: -12.86 SS G_CDS: 0.07 Total: -12.79 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -30.76 -5.90 -36.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267254.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.279 kcal (2) G-P(sol) polarization free energy of solvation -30.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds