Wall clock time and date at job start Thu Apr 9 2020 14:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00114 * 2 1 4 4 H 1.48504 * 109.47401 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47165 * 299.99607 * 3 2 1 6 6 H 1.48500 * 109.47593 * 59.99591 * 3 2 1 7 7 C 1.37876 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00276 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99960 * 0.02562 * 7 2 1 10 10 F 1.39896 * 109.46890 * 59.99606 * 9 7 2 11 11 F 1.39907 * 109.46933 * 300.00161 * 9 7 2 12 12 C 1.52993 * 109.47318 * 179.97438 * 9 7 2 13 13 C 1.53120 * 109.52343 * 184.99675 * 12 9 7 14 14 C 1.53042 * 109.27821 * 182.43872 * 13 12 9 15 15 N 1.46848 * 109.52160 * 59.18425 * 14 13 12 16 16 C 1.46847 * 111.19556 * 298.25623 * 15 14 13 17 17 C 1.53034 * 109.52616 * 61.74332 * 16 15 14 18 18 H 0.97003 * 119.99860 * 0.02562 * 1 2 3 19 19 H 1.08996 * 109.57542 * 305.16002 * 12 9 7 20 20 H 1.08997 * 109.49895 * 62.50324 * 13 12 9 21 21 H 1.08998 * 109.50437 * 302.38327 * 13 12 9 22 22 H 1.08995 * 109.46577 * 299.16647 * 14 13 12 23 23 H 1.08994 * 109.45929 * 179.19867 * 14 13 12 24 24 H 1.00901 * 111.00066 * 62.35005 * 15 14 13 25 25 H 1.09000 * 109.46087 * 181.75730 * 16 15 14 26 26 H 1.09004 * 109.46240 * 301.72671 * 16 15 14 27 27 H 1.08998 * 109.50577 * 180.88107 * 17 16 15 28 28 H 1.09000 * 109.50061 * 60.76065 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 9 0.4471 -2.5734 -1.1420 11 9 0.4462 -2.5730 1.1426 12 6 2.2452 -3.6621 0.0005 13 6 1.4850 -4.9852 -0.1252 14 6 2.4792 -6.1471 -0.0634 15 7 3.2097 -6.1007 1.2097 16 6 3.9850 -4.8596 1.3320 17 6 3.0359 -3.6594 1.3118 18 1 -0.4850 0.8401 -0.0004 19 1 2.9320 -3.5553 -0.8391 20 1 0.9541 -5.0108 -1.0768 21 1 0.7706 -5.0737 0.6933 22 1 3.1848 -6.0656 -0.8901 23 1 1.9396 -7.0911 -0.1383 24 1 2.5815 -6.2131 1.9913 25 1 4.5392 -4.8686 2.2706 26 1 4.6836 -4.7842 0.4986 27 1 3.6129 -2.7377 1.3869 28 1 2.3459 -3.7270 2.1529 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261267254.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:46 Heat of formation + Delta-G solvation = -145.219501 kcal Electronic energy + Delta-G solvation = -14264.715352 eV Core-core repulsion = 11563.236053 eV Total energy + Delta-G solvation = -2701.479299 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.98448 -47.00964 -39.56397 -35.03893 -33.40662 -31.77976 -28.91974 -25.63404 -23.76332 -22.73250 -21.01927 -19.24356 -17.61716 -17.53105 -16.73413 -16.19671 -15.80966 -15.57192 -15.18958 -14.28519 -14.08129 -13.90295 -13.74720 -13.46725 -13.25841 -13.02991 -12.88792 -12.69323 -12.26650 -12.11710 -11.95864 -11.58360 -11.34160 -10.95679 -10.74496 -9.31684 -8.38165 -6.73051 1.36260 1.37513 1.51703 2.27335 2.92650 3.34973 3.57534 3.77004 3.85628 4.18511 4.31797 4.45859 4.53150 4.59480 4.80848 4.85365 4.95842 5.04315 5.12827 5.23781 5.27270 5.48396 5.55604 5.60624 6.07245 6.41065 6.47956 7.12571 8.67918 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.049599 B = 0.011544 C = 0.010291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.397694 B = 2424.889872 C = 2720.191124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.983 3.017 4 H -0.252 1.252 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.606 4.606 8 H 0.089 0.911 9 C 0.378 3.622 10 F -0.246 7.246 11 F -0.243 7.243 12 C -0.106 4.106 13 C -0.152 4.152 14 C 0.069 3.931 15 N -0.683 5.683 16 C 0.066 3.934 17 C -0.135 4.135 18 H 0.271 0.729 19 H 0.082 0.918 20 H 0.059 0.941 21 H 0.050 0.950 22 H 0.078 0.922 23 H 0.094 0.906 24 H 0.344 0.656 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.006 -7.794 1.526 10.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.182 4.182 3 Si 0.805 3.195 4 H -0.175 1.175 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.643 4.643 8 H 0.108 0.892 9 C 0.343 3.657 10 F -0.228 7.228 11 F -0.224 7.224 12 C -0.126 4.126 13 C -0.191 4.191 14 C -0.061 4.061 15 N -0.311 5.311 16 C -0.064 4.064 17 C -0.174 4.174 18 H 0.080 0.920 19 H 0.101 0.899 20 H 0.078 0.922 21 H 0.069 0.931 22 H 0.096 0.904 23 H 0.112 0.888 24 H 0.161 0.839 25 H 0.112 0.888 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.338 -8.096 1.291 11.003 hybrid contribution -1.235 1.822 0.031 2.202 sum 6.103 -6.274 1.323 8.852 Atomic orbital electron populations 1.70192 1.08278 1.28767 1.46523 1.26227 0.95796 1.04489 0.91670 0.85141 0.79262 0.76993 0.78059 1.17530 1.19991 1.19904 1.22060 0.94726 0.90336 1.57207 0.89249 1.19054 0.80665 0.96851 0.69163 1.92786 1.78257 1.97623 1.54107 1.92781 1.78089 1.97617 1.53922 1.21933 0.96825 0.93214 1.00602 1.22291 0.99265 0.95756 1.01835 1.21984 0.94676 0.96482 0.92910 1.60804 1.29845 1.35627 1.04788 1.22038 0.95120 0.85777 1.03432 1.22104 0.98905 1.01171 0.95227 0.92004 0.89944 0.92193 0.93096 0.90379 0.88819 0.83855 0.88792 0.90436 0.91424 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.23 12.62 21.45 0.27 -54.95 15 2 C 0.02 1.26 5.38 84.65 0.46 1.72 15 3 Si 0.98 43.07 29.54 68.60 2.03 45.10 15 4 H -0.25 -10.26 7.11 99.48 0.71 -9.56 15 5 H -0.27 -11.73 7.11 99.48 0.71 -11.03 15 6 H -0.27 -11.66 7.11 99.48 0.71 -10.96 15 7 C -0.61 -33.80 7.94 25.60 0.20 -33.60 15 8 H 0.09 4.64 7.08 -2.91 -0.02 4.62 15 9 C 0.38 20.31 1.12 29.85 0.03 20.34 15 10 F -0.25 -14.45 15.95 44.97 0.72 -13.73 15 11 F -0.24 -14.06 15.49 44.97 0.70 -13.36 15 12 C -0.11 -4.36 1.89 -10.71 -0.02 -4.38 15 13 C -0.15 -5.34 5.09 30.65 0.16 -5.18 15 14 C 0.07 1.82 6.55 86.33 0.57 2.39 15 15 N -0.68 -17.32 6.87 -514.01 -3.53 -20.85 15 16 C 0.07 1.75 6.55 86.32 0.57 2.32 15 17 C -0.13 -4.78 5.00 30.65 0.15 -4.63 15 18 H 0.27 15.38 8.31 -92.71 -0.77 14.61 15 19 H 0.08 3.31 8.14 -2.39 -0.02 3.30 15 20 H 0.06 2.19 7.77 -2.39 -0.02 2.17 15 21 H 0.05 1.89 7.88 -2.39 -0.02 1.87 15 22 H 0.08 1.97 8.14 -2.39 -0.02 1.95 15 23 H 0.09 2.07 8.14 -2.39 -0.02 2.05 15 24 H 0.34 8.28 8.86 -89.69 -0.79 7.49 15 25 H 0.09 2.11 8.14 -2.39 -0.02 2.10 15 26 H 0.08 1.98 8.14 -2.38 -0.02 1.96 15 27 H 0.07 2.53 7.05 -2.39 -0.02 2.51 15 28 H 0.05 1.91 7.61 -2.39 -0.02 1.90 15 Total: -1.00 -66.50 236.59 2.66 -63.84 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.37 Total: 14.98 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 2.11 Total: -21.02 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -3.26 Total: -75.80 kcal Atomic # 9 Polarization: -28.51 SS G_CDS: 1.41 Total: -27.09 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -66.50 2.66 -63.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267254.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.382 kcal (2) G-P(sol) polarization free energy of solvation -66.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds