Wall clock time and date at job start Thu Apr 9 2020 14:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30689 * 1 3 3 Si 1.86799 * 119.99769 * 2 1 4 4 H 1.48506 * 109.46815 * 270.00036 * 3 2 1 5 5 H 1.48492 * 109.47316 * 30.00036 * 3 2 1 6 6 H 1.48495 * 109.46771 * 150.00294 * 3 2 1 7 7 C 1.40088 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99863 * 179.97438 * 7 2 1 9 9 C 1.41545 * 120.00338 * 359.97438 * 7 2 1 10 10 N 1.33680 * 119.73031 * 0.02562 * 9 7 2 11 11 N 1.28753 * 121.12253 * 180.02562 * 10 9 7 12 12 C 1.32548 * 120.51542 * 359.97438 * 11 10 9 13 13 C 1.39157 * 119.44390 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.52875 * 179.97438 * 13 12 11 15 15 C 1.53778 * 113.61715 * 61.74417 * 14 13 12 16 16 C 1.53963 * 87.01845 * 220.04980 * 15 14 13 17 17 C 1.53779 * 87.11139 * 25.35965 * 16 15 14 18 18 N 1.32036 * 118.94115 * 359.97438 * 13 12 11 19 19 H 0.96999 * 119.99858 * 359.97438 * 1 2 3 20 20 H 1.08005 * 120.27621 * 180.02562 * 12 11 10 21 21 H 1.09005 * 112.84749 * 192.93756 * 14 13 12 22 22 H 1.08999 * 113.61215 * 334.56086 * 15 14 13 23 23 H 1.08988 * 113.61948 * 105.47143 * 15 14 13 24 24 H 1.08998 * 113.53203 * 270.80758 * 16 15 14 25 25 H 1.08999 * 113.74555 * 139.94187 * 16 15 14 26 26 H 1.09004 * 113.61501 * 220.09330 * 17 16 15 27 27 H 1.08997 * 113.61756 * 89.19039 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4883 2.0464 -1.4002 5 1 1.4383 2.6526 0.7000 6 1 3.5384 1.4401 0.7000 7 6 2.0073 -1.2132 -0.0005 8 1 3.0872 -1.2132 -0.0010 9 6 1.2996 -2.4390 -0.0005 10 7 -0.0372 -2.4328 -0.0005 11 7 -0.7078 -3.5319 0.0000 12 6 -0.0836 -4.7012 0.0000 13 6 1.3076 -4.7340 0.0000 14 6 2.0423 -6.0497 0.0006 15 6 1.7603 -6.9134 -1.2401 16 6 1.7347 -8.1256 -0.2913 17 6 1.3457 -7.1439 0.8267 18 7 1.9735 -3.5939 -0.0005 19 1 -0.4850 0.8400 0.0004 20 1 -0.6500 -5.6208 0.0000 21 1 3.1034 -5.9419 0.2254 22 1 0.7980 -6.7048 -1.7078 23 1 2.5834 -6.9340 -1.9541 24 1 2.7121 -8.5862 -0.1473 25 1 0.9556 -8.8507 -0.5263 26 1 1.8348 -7.3502 1.7787 27 1 0.2700 -6.9983 0.9251 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261267600.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:47 Heat of formation + Delta-G solvation = 54.892033 kcal Electronic energy + Delta-G solvation = -12732.653470 eV Core-core repulsion = 10490.540845 eV Total energy + Delta-G solvation = -2242.112625 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 205.091 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.73409 -39.41030 -35.99145 -34.89666 -32.67876 -28.73952 -27.59131 -26.48956 -24.78993 -23.61985 -20.55236 -19.76393 -18.47523 -17.30640 -16.73178 -16.26330 -15.97061 -15.72297 -15.00108 -13.71399 -13.41552 -13.32479 -13.29924 -13.04453 -12.98550 -12.26799 -12.06683 -11.96189 -11.69740 -11.56481 -11.51567 -11.08716 -11.05771 -10.21081 -9.40568 -8.64067 -6.98874 0.47153 0.57620 1.37531 1.49458 1.56361 2.15208 2.61455 3.42295 3.52771 3.69896 3.88335 3.89784 4.03168 4.13809 4.20814 4.51581 4.78555 4.87415 4.91748 4.98853 5.09942 5.14330 5.16149 5.32037 5.45211 5.62822 5.95272 6.30600 6.44061 6.99193 8.20636 8.58819 Molecular weight = 205.09amu Principal moments of inertia in cm(-1) A = 0.069879 B = 0.008204 C = 0.007606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.596044 B = 3412.209605 C = 3680.431642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.016 3.984 3 Si 1.011 2.989 4 H -0.256 1.256 5 H -0.260 1.260 6 H -0.251 1.251 7 C -0.417 4.417 8 H 0.100 0.900 9 C 0.286 3.714 10 N -0.337 5.337 11 N -0.227 5.227 12 C -0.156 4.156 13 C 0.168 3.832 14 C -0.071 4.071 15 C -0.125 4.125 16 C -0.116 4.116 17 C -0.127 4.127 18 N -0.565 5.565 19 H 0.292 0.708 20 H 0.178 0.822 21 H 0.100 0.900 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.098 0.902 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.086 -8.693 -0.283 9.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.207 4.207 3 Si 0.828 3.172 4 H -0.181 1.181 5 H -0.184 1.184 6 H -0.175 1.175 7 C -0.453 4.453 8 H 0.118 0.882 9 C 0.048 3.952 10 N -0.196 5.196 11 N -0.077 5.077 12 C -0.327 4.327 13 C 0.005 3.995 14 C -0.091 4.091 15 C -0.164 4.164 16 C -0.153 4.153 17 C -0.165 4.165 18 N -0.289 5.289 19 H 0.103 0.897 20 H 0.195 0.805 21 H 0.118 0.882 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.117 0.883 25 H 0.108 0.892 26 H 0.098 0.902 27 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.410 -7.541 -0.276 8.281 hybrid contribution 0.458 0.072 -0.001 0.463 sum 3.868 -7.469 -0.277 8.416 Atomic orbital electron populations 1.70156 1.09357 1.30796 1.26509 1.27305 0.95946 1.05273 0.92225 0.84788 0.78700 0.73675 0.79995 1.18059 1.18396 1.17459 1.19788 0.95340 0.88310 1.41902 0.88181 1.21798 0.89300 0.92798 0.91276 1.74800 1.06819 1.15550 1.22445 1.73309 1.34306 0.97050 1.03081 1.24326 0.94686 0.99040 1.14675 1.22732 0.92636 0.95368 0.88719 1.21715 0.99432 0.86996 1.00990 1.22971 1.02248 0.95676 0.95492 1.22770 1.03289 0.95321 0.93896 1.23030 1.00962 0.94066 0.98453 1.69136 1.40584 0.98923 1.20229 0.89687 0.80494 0.88213 0.90552 0.90608 0.88323 0.89207 0.90233 0.89632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.25 11.46 21.85 0.25 -41.00 15 2 C 0.02 0.85 5.50 85.31 0.47 1.32 15 3 Si 1.01 37.63 29.56 68.60 2.03 39.66 15 4 H -0.26 -9.09 7.11 99.48 0.71 -8.38 15 5 H -0.26 -9.04 7.11 99.48 0.71 -8.34 15 6 H -0.25 -8.96 7.11 99.48 0.71 -8.26 15 7 C -0.42 -23.72 9.39 23.53 0.22 -23.50 15 8 H 0.10 5.36 7.85 -2.91 -0.02 5.34 15 9 C 0.29 17.30 7.43 134.99 1.00 18.30 15 10 N -0.34 -20.91 9.09 -56.32 -0.51 -21.43 15 11 N -0.23 -12.79 11.64 -56.56 -0.66 -13.45 15 12 C -0.16 -7.31 10.07 84.81 0.85 -6.46 15 13 C 0.17 7.72 6.21 42.75 0.27 7.99 15 14 C -0.07 -2.34 4.18 -11.01 -0.05 -2.39 15 15 C -0.13 -3.26 7.57 31.18 0.24 -3.02 15 16 C -0.12 -2.20 8.09 31.18 0.25 -1.95 15 17 C -0.13 -3.14 7.47 31.12 0.23 -2.91 15 18 N -0.56 -31.00 10.41 -181.56 -1.89 -32.89 15 19 H 0.29 14.24 8.29 -92.71 -0.77 13.48 15 20 H 0.18 6.62 6.65 -2.91 -0.02 6.60 15 21 H 0.10 3.27 8.14 -2.38 -0.02 3.25 15 22 H 0.08 2.11 7.80 -2.39 -0.02 2.09 15 23 H 0.08 1.84 8.14 -2.39 -0.02 1.82 15 24 H 0.10 1.54 8.14 -2.39 -0.02 1.52 15 25 H 0.09 1.39 8.14 -2.39 -0.02 1.37 15 26 H 0.08 1.78 8.14 -2.39 -0.02 1.76 15 27 H 0.09 2.17 6.28 -2.39 -0.02 2.15 15 Total: -1.00 -71.20 236.97 3.88 -67.31 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 1.18 Total: 14.41 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 3.49 Total: -12.62 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -2.81 Total: -108.76 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.03 Total: 39.66 kcal Total: -71.20 3.88 -67.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261267600.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.206 kcal (2) G-P(sol) polarization free energy of solvation -71.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds