Wall clock time and date at job start Thu Apr 9 2020 14:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.52124 * 305.13078 * 10 9 7 12 12 C 1.53119 * 109.52548 * 185.00353 * 10 9 7 13 13 C 1.53034 * 109.27865 * 182.44369 * 12 10 9 14 14 N 1.46849 * 109.52681 * 59.17582 * 13 12 10 15 15 C 1.46845 * 111.19827 * 298.26122 * 14 13 12 16 16 C 1.53035 * 109.52462 * 61.73763 * 15 14 13 17 17 F 1.39903 * 109.50352 * 180.88008 * 16 15 14 18 18 F 1.39899 * 109.50305 * 60.76308 * 16 15 14 19 19 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 21 21 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 22 22 H 1.08997 * 109.50080 * 302.37966 * 12 10 9 23 23 H 1.08995 * 109.50182 * 62.49741 * 12 10 9 24 24 H 1.08998 * 109.46197 * 179.19192 * 13 12 10 25 25 H 1.09006 * 109.46033 * 299.16122 * 13 12 10 26 26 H 1.00901 * 111.00091 * 174.15779 * 14 13 12 27 27 H 1.09001 * 109.46735 * 181.75666 * 15 14 13 28 28 H 1.09007 * 109.46356 * 301.72529 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 6 4.0216 -2.6365 -0.0031 11 1 3.5892 -3.1742 0.8407 12 6 5.5481 -2.6393 0.1164 13 6 6.0569 -4.0814 0.0571 14 7 5.6462 -4.6950 -1.2122 15 6 4.1833 -4.7464 -1.3284 16 6 3.6185 -3.3242 -1.3105 17 9 2.2233 -3.3744 -1.4010 18 9 4.1320 -2.6041 -2.3945 19 1 -0.4850 0.8401 0.0004 20 1 3.8712 -0.6827 -0.8987 21 1 3.8785 -0.6777 0.8813 22 1 5.9785 -2.0676 -0.7058 23 1 5.8396 -2.1892 1.0653 24 1 7.1446 -4.0859 0.1275 25 1 5.6369 -4.6491 0.8875 26 1 6.0498 -5.6139 -1.3170 27 1 3.9100 -5.2339 -2.2642 28 1 3.7721 -5.3109 -0.4915 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261296851.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:55 Heat of formation + Delta-G solvation = -107.022672 kcal Electronic energy + Delta-G solvation = -14288.561227 eV Core-core repulsion = 11588.738267 eV Total energy + Delta-G solvation = -2699.822960 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.01563 -45.97646 -37.80552 -33.88269 -31.89749 -29.87920 -27.94915 -23.81038 -22.68393 -20.80313 -19.51483 -17.07072 -16.74194 -16.00685 -15.71424 -15.14590 -14.36297 -13.94949 -13.83187 -12.99356 -12.55452 -12.39466 -12.29449 -12.11546 -11.96072 -11.65260 -11.56547 -11.09375 -10.70069 -10.45835 -10.01541 -9.68236 -9.44543 -8.89769 -8.50495 -8.44986 -5.94637 -3.92311 3.36538 3.43123 3.45543 4.03484 4.41743 4.52468 4.78487 4.99633 5.09639 5.22854 5.38574 5.49102 5.57726 5.73254 5.82899 5.99749 6.13271 6.24946 6.57962 6.61789 6.92248 7.15785 7.25864 7.33132 7.81911 8.60704 9.14920 9.66712 11.18231 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.048019 B = 0.011992 C = 0.010750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.958850 B = 2334.300206 C = 2604.049300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.873 3.127 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.088 0.912 9 C -0.012 4.012 10 C -0.115 4.115 11 H 0.086 0.914 12 C -0.117 4.117 13 C 0.053 3.947 14 N -0.681 5.681 15 C 0.018 3.982 16 C 0.308 3.692 17 F -0.180 7.180 18 F -0.196 7.196 19 H 0.261 0.739 20 H 0.020 0.980 21 H 0.025 0.975 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.033 0.967 26 H 0.347 0.653 27 H 0.091 0.909 28 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.418 -8.684 -0.136 14.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.701 3.299 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.560 4.560 8 H 0.106 0.894 9 C -0.049 4.049 10 C -0.134 4.134 11 H 0.104 0.896 12 C -0.155 4.155 13 C -0.076 4.076 14 N -0.313 5.313 15 C -0.113 4.113 16 C 0.271 3.729 17 F -0.161 7.161 18 F -0.177 7.177 19 H 0.071 0.929 20 H 0.039 0.961 21 H 0.043 0.957 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.051 0.949 26 H 0.165 0.835 27 H 0.109 0.891 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.293 -7.964 -0.516 13.828 hybrid contribution 0.002 0.275 0.468 0.543 sum 11.294 -7.689 -0.048 13.663 Atomic orbital electron populations 1.69910 1.06211 1.26612 1.51441 1.24988 0.94681 0.98827 0.94730 0.86880 0.80349 0.84134 0.78555 1.20281 1.21455 1.19153 1.21390 0.89004 0.95363 1.50258 0.89380 1.19647 0.97974 0.89984 0.97279 1.22095 0.95133 1.01270 0.94895 0.89560 1.21717 0.95231 0.95610 1.02964 1.22068 1.00174 0.95944 0.89376 1.60084 1.07723 1.27410 1.36116 1.22868 0.89374 0.95806 1.03201 1.20681 0.75643 0.90275 0.86323 1.93054 1.29624 1.96790 1.96600 1.92935 1.86851 1.80106 1.57794 0.92886 0.96128 0.95713 0.90565 0.90609 0.90448 0.94868 0.83474 0.89090 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.57 13.96 55.43 0.77 -27.80 15 2 C 0.07 2.05 5.47 -17.82 -0.10 1.96 15 3 Si 0.87 22.35 27.47 -169.99 -4.67 17.68 15 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 15 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 15 6 H -0.27 -6.50 6.54 56.52 0.37 -6.13 15 7 C -0.52 -15.19 8.57 -34.44 -0.30 -15.49 15 8 H 0.09 2.74 6.16 -52.49 -0.32 2.42 15 9 C -0.01 -0.28 3.45 -27.88 -0.10 -0.38 15 10 C -0.11 -2.29 1.97 -90.50 -0.18 -2.47 15 11 H 0.09 1.69 8.14 -51.93 -0.42 1.27 15 12 C -0.12 -1.86 5.25 -26.65 -0.14 -2.00 15 13 C 0.05 0.67 6.55 -3.83 -0.03 0.65 15 14 N -0.68 -8.92 6.78 -113.81 -0.77 -9.69 15 15 C 0.02 0.27 6.04 -3.84 -0.02 0.25 15 16 C 0.31 6.19 1.66 -26.65 -0.04 6.15 15 17 F -0.18 -4.26 14.05 2.25 0.03 -4.23 15 18 F -0.20 -4.29 15.90 2.25 0.04 -4.26 15 19 H 0.26 7.75 8.31 -40.82 -0.34 7.41 15 20 H 0.02 0.52 7.03 -51.93 -0.37 0.15 15 21 H 0.02 0.59 7.19 -51.93 -0.37 0.22 15 22 H 0.08 1.29 7.91 -51.93 -0.41 0.87 15 23 H 0.08 1.09 8.14 -51.93 -0.42 0.66 15 24 H 0.08 0.81 8.14 -51.93 -0.42 0.38 15 25 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 15 26 H 0.35 3.41 8.90 -39.29 -0.35 3.06 15 27 H 0.09 1.25 8.14 -51.93 -0.42 0.83 15 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 15 LS Contribution 232.22 15.07 3.50 3.50 Total: -1.00 -32.65 232.22 -5.53 -38.18 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -3.53 Total: -2.04 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -0.90 Total: -11.33 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.00 Total: -37.49 kcal Atomic # 9 Polarization: -8.56 SS G_CDS: 0.07 Total: -8.49 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.67 Total: 17.68 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -32.65 -5.53 -38.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261296851.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.846 kcal (2) G-P(sol) polarization free energy of solvation -32.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds