Wall clock time and date at job start Thu Apr 9 2020 14:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00247 * 2 1 4 4 H 1.48492 * 109.47474 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47195 * 300.00655 * 3 2 1 6 6 H 1.48503 * 109.47143 * 60.00190 * 3 2 1 7 7 C 1.37875 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99923 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00007 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47315 * 299.99822 * 9 7 2 11 11 C 1.52997 * 109.47300 * 60.00000 * 9 7 2 12 12 F 1.39900 * 109.47296 * 65.00142 * 11 9 7 13 13 F 1.39910 * 109.47249 * 184.99938 * 11 9 7 14 14 C 1.53003 * 109.47331 * 180.02562 * 9 7 2 15 15 H 1.09004 * 110.62895 * 296.89202 * 14 9 7 16 16 C 1.55138 * 110.70598 * 59.99521 * 14 9 7 17 17 C 1.54908 * 101.68619 * 154.02265 * 16 14 9 18 18 N 1.47887 * 104.77420 * 322.97931 * 17 16 14 19 19 C 1.47444 * 108.58784 * 24.04325 * 18 17 16 20 20 H 0.97002 * 119.99603 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.47260 * 304.99775 * 11 9 7 22 22 H 1.09002 * 110.99302 * 272.13266 * 16 14 9 23 23 H 1.08995 * 110.99003 * 35.91153 * 16 14 9 24 24 H 1.08993 * 110.37866 * 81.77867 * 17 16 14 25 25 H 1.09005 * 110.37455 * 204.12444 * 17 16 14 26 26 H 1.00899 * 110.97002 * 261.78382 * 18 17 16 27 27 H 1.08998 * 109.89066 * 239.63908 * 19 18 17 28 28 H 1.08993 * 110.02675 * 118.51798 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8897 11 6 0.3709 -2.5799 -1.2494 12 9 1.1812 -2.6205 -2.3892 13 9 -0.4133 -3.7373 -1.1933 14 6 2.2452 -3.6621 -0.0005 15 1 2.8454 -3.6542 -0.9104 16 6 3.1532 -3.6075 1.2562 17 6 3.5450 -5.0967 1.4250 18 7 2.3297 -5.8513 1.0500 19 6 1.5094 -5.0090 0.1604 20 1 -0.4850 0.8401 0.0004 21 1 -0.2766 -1.7043 -1.2949 22 1 4.0332 -2.9903 1.0755 23 1 2.5986 -3.2489 2.1233 24 1 4.3694 -5.3502 0.7587 25 1 3.8159 -5.3028 2.4606 26 1 1.8087 -6.1268 1.8690 27 1 0.5283 -4.8446 0.6061 28 1 1.3991 -5.4897 -0.8116 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261318004.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:04:59 Heat of formation + Delta-G solvation = -137.241046 kcal Electronic energy + Delta-G solvation = -14197.809093 eV Core-core repulsion = 11496.675765 eV Total energy + Delta-G solvation = -2701.133327 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.52960 -47.49406 -39.54463 -35.77783 -32.91294 -30.14641 -28.60874 -26.69836 -23.32390 -22.27598 -20.83185 -18.83519 -18.12393 -17.65365 -17.02408 -16.71898 -16.41495 -15.91318 -14.66608 -14.50851 -14.32192 -13.96601 -13.88016 -13.59269 -13.17493 -12.87320 -12.66587 -12.52159 -12.18778 -12.13058 -12.03974 -11.45748 -11.25007 -10.79455 -10.67745 -9.40689 -8.28989 -6.40455 1.39812 1.43576 1.54276 2.36430 2.95470 3.37900 3.52017 3.84494 3.90111 4.19274 4.25410 4.37835 4.48903 4.59203 4.75083 4.79029 4.99243 5.04242 5.14221 5.31156 5.33573 5.58885 5.72507 5.89588 6.08560 6.55082 6.66760 7.29485 8.78605 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.034312 B = 0.013438 C = 0.010756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.850770 B = 2083.184296 C = 2602.474765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.014 3.986 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.066 0.934 9 C 0.022 3.978 10 H 0.032 0.968 11 C 0.244 3.756 12 F -0.226 7.226 13 F -0.232 7.232 14 C -0.099 4.099 15 H 0.058 0.942 16 C -0.127 4.127 17 C 0.050 3.950 18 N -0.688 5.688 19 C 0.058 3.942 20 H 0.270 0.730 21 H 0.115 0.885 22 H 0.070 0.930 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.344 0.656 27 H 0.049 0.951 28 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.592 -5.065 2.459 6.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.185 4.185 3 Si 0.788 3.212 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.003 3.997 10 H 0.050 0.950 11 C 0.190 3.810 12 F -0.208 7.208 13 F -0.213 7.213 14 C -0.119 4.119 15 H 0.077 0.923 16 C -0.166 4.166 17 C -0.079 4.079 18 N -0.317 5.317 19 C -0.071 4.071 20 H 0.080 0.920 21 H 0.132 0.868 22 H 0.089 0.911 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.160 0.840 27 H 0.067 0.933 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.754 -5.378 1.916 6.833 hybrid contribution -0.391 1.634 0.282 1.704 sum 3.362 -3.744 2.198 5.491 Atomic orbital electron populations 1.69824 1.07217 1.28307 1.50978 1.25823 0.95800 1.02928 0.93965 0.85403 0.79106 0.78952 0.77701 1.18952 1.20689 1.20286 1.21288 0.93618 0.90061 1.50649 0.91583 1.19600 0.93521 0.94988 0.91591 0.94966 1.22727 0.87915 0.84885 0.85504 1.92784 1.75917 1.97082 1.54994 1.92810 1.76614 1.55067 1.96835 1.22300 0.96979 0.93802 0.98800 0.92304 1.22936 0.99173 0.97716 0.96774 1.22938 0.93356 0.90216 1.01350 1.61762 1.08219 1.40930 1.20783 1.22627 0.95590 0.91568 0.97344 0.92043 0.86762 0.91123 0.92190 0.90627 0.89248 0.83976 0.93281 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.76 11.29 21.45 0.24 -49.52 15 2 C 0.01 0.72 5.29 84.65 0.45 1.16 15 3 Si 0.96 41.35 29.54 68.60 2.03 43.37 15 4 H -0.27 -11.07 7.11 99.48 0.71 -10.37 15 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 15 6 H -0.28 -11.62 7.11 99.48 0.71 -10.92 15 7 C -0.52 -26.66 7.87 25.60 0.20 -26.46 15 8 H 0.07 3.35 7.27 -2.91 -0.02 3.33 15 9 C 0.02 1.08 1.45 -11.54 -0.02 1.06 15 10 H 0.03 1.67 8.06 -2.39 -0.02 1.65 15 11 C 0.24 11.92 4.66 71.98 0.34 12.26 15 12 F -0.23 -11.21 16.43 44.97 0.74 -10.47 15 13 F -0.23 -10.63 14.96 44.97 0.67 -9.95 15 14 C -0.10 -4.08 2.29 -9.61 -0.02 -4.11 15 15 H 0.06 2.58 7.66 -2.39 -0.02 2.56 15 16 C -0.13 -4.47 5.75 31.98 0.18 -4.28 15 17 C 0.05 1.43 7.58 86.77 0.66 2.09 15 18 N -0.69 -21.20 7.39 -504.33 -3.73 -24.93 15 19 C 0.06 2.15 5.71 86.65 0.49 2.65 15 20 H 0.27 13.78 8.31 -92.71 -0.77 13.01 15 21 H 0.12 6.06 5.95 -2.39 -0.01 6.05 15 22 H 0.07 2.46 7.88 -2.39 -0.02 2.44 15 23 H 0.06 2.18 8.05 -2.39 -0.02 2.16 15 24 H 0.08 2.10 8.14 -2.39 -0.02 2.08 15 25 H 0.09 2.03 8.14 -2.38 -0.02 2.02 15 26 H 0.34 9.12 8.91 -89.69 -0.80 8.32 15 27 H 0.05 1.87 7.01 -2.39 -0.02 1.86 15 28 H 0.06 2.26 8.07 -2.39 -0.02 2.24 15 Total: -1.00 -54.58 234.97 2.60 -51.98 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.37 Total: 15.14 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 2.28 Total: -15.63 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -3.49 Total: -74.45 kcal Atomic # 9 Polarization: -21.83 SS G_CDS: 1.41 Total: -20.42 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Total: -54.58 2.60 -51.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261318004.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.257 kcal (2) G-P(sol) polarization free energy of solvation -54.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds