Wall clock time and date at job start Thu Apr 9 2020 14:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.48537 * 111.00373 * 2 1 4 4 C 1.54932 * 103.22696 * 159.71672 * 3 2 1 5 5 C 1.54595 * 102.92484 * 322.58632 * 4 3 2 6 6 C 1.50700 * 110.30510 * 263.04207 * 5 4 3 7 7 H 1.07996 * 120.00371 * 356.94301 * 6 5 4 8 8 C 1.37879 * 119.99765 * 176.94295 * 6 5 4 9 9 N 1.31512 * 120.00064 * 187.67978 * 8 6 5 10 10 Si 1.86803 * 119.99894 * 7.67642 * 8 6 5 11 11 H 1.48498 * 109.47033 * 84.65099 * 10 8 6 12 12 H 1.48499 * 109.47249 * 204.64596 * 10 8 6 13 13 H 1.48494 * 109.47185 * 324.64898 * 10 8 6 14 14 C 1.52996 * 110.39428 * 140.91964 * 5 4 3 15 15 F 1.39905 * 109.46895 * 302.77800 * 14 5 4 16 16 F 1.39903 * 109.47500 * 62.77954 * 14 5 4 17 17 C 1.47909 * 110.99668 * 117.39521 * 2 1 3 18 18 H 1.09004 * 109.46794 * 60.12778 * 1 2 3 19 19 H 1.09003 * 109.47570 * 180.12481 * 1 2 3 20 20 H 1.08999 * 109.47345 * 300.12898 * 1 2 3 21 21 H 1.09000 * 110.66024 * 278.15437 * 3 2 1 22 22 H 1.09001 * 110.66438 * 41.28347 * 3 2 1 23 23 H 1.09002 * 110.72629 * 80.94662 * 4 3 2 24 24 H 1.09008 * 110.72422 * 204.22659 * 4 3 2 25 25 H 0.97003 * 119.99676 * 179.97438 * 9 8 6 26 26 H 1.09000 * 109.47376 * 182.78080 * 14 5 4 27 27 H 1.09001 * 109.91800 * 333.50749 * 17 2 1 28 28 H 1.08999 * 109.92111 * 94.60537 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2106 0.5228 5 6 3.2981 0.1053 1.5932 6 6 3.1811 0.7182 2.9649 7 1 3.2591 1.7884 3.0867 8 6 2.9743 -0.0875 4.0646 9 7 2.7217 0.4522 5.2370 10 14 3.0530 -1.9456 3.8891 11 1 4.4649 -2.3934 3.9950 12 1 2.2508 -2.5790 4.9663 13 1 2.5060 -2.3415 2.5666 14 6 4.4891 -0.8537 1.5409 15 9 4.5907 -1.4014 0.2575 16 9 5.6632 -0.1563 1.8446 17 6 1.9989 -0.6354 1.2260 18 1 -0.3633 0.5119 -0.8912 19 1 -0.3634 -1.0277 0.0022 20 1 -0.3634 0.5158 0.8888 21 1 2.0041 1.7976 -1.0096 22 1 1.4237 2.0205 0.6729 23 1 4.1115 0.8835 -0.2786 24 1 3.8123 2.1352 0.9717 25 1 2.5759 -0.1147 6.0105 26 1 4.3436 -1.6537 2.2668 27 1 1.2757 -0.5402 2.0360 28 1 2.2088 -1.6883 1.0377 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261321042.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:05:05 Heat of formation + Delta-G solvation = -85.463092 kcal Electronic energy + Delta-G solvation = -14559.182172 eV Core-core repulsion = 11860.294106 eV Total energy + Delta-G solvation = -2698.888067 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.097 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.01069 -45.93399 -38.34196 -33.53336 -31.55934 -29.11320 -25.95070 -24.70987 -23.56089 -20.75489 -19.30469 -17.21039 -16.72776 -16.06691 -15.54082 -14.78349 -14.48287 -13.74345 -13.45009 -13.15787 -12.88887 -12.38661 -12.26448 -12.07054 -11.71767 -11.34192 -11.22844 -10.84567 -10.75119 -10.43851 -10.13634 -9.98504 -9.53911 -9.08893 -8.73097 -7.83984 -6.35395 -4.36108 3.01827 3.06129 3.17206 4.11341 4.65737 4.72975 4.92221 5.12810 5.50441 5.56166 5.64841 5.88540 5.90291 6.01555 6.09165 6.19973 6.24276 6.42372 6.59068 6.70412 6.77037 6.94783 7.24096 7.58343 7.62650 8.25329 8.70658 9.23764 10.76973 Molecular weight = 205.10amu Principal moments of inertia in cm(-1) A = 0.028382 B = 0.019183 C = 0.015604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.303000 B = 1459.263222 C = 1793.988273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.524 5.524 3 C 0.043 3.957 4 C -0.102 4.102 5 C -0.004 4.004 6 C -0.508 4.508 7 H 0.086 0.914 8 C 0.081 3.919 9 N -0.880 5.880 10 Si 0.835 3.165 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.239 1.239 14 C 0.253 3.747 15 F -0.219 7.219 16 F -0.202 7.202 17 C 0.042 3.958 18 H 0.060 0.940 19 H 0.060 0.940 20 H 0.029 0.971 21 H 0.069 0.931 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.269 0.731 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.689 -2.133 -7.372 7.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.248 5.248 3 C -0.085 4.085 4 C -0.140 4.140 5 C -0.006 4.006 6 C -0.546 4.546 7 H 0.104 0.896 8 C -0.123 4.123 9 N -0.515 5.515 10 Si 0.663 3.337 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.164 1.164 14 C 0.200 3.800 15 F -0.200 7.200 16 F -0.183 7.183 17 C -0.086 4.086 18 H 0.079 0.921 19 H 0.079 0.921 20 H 0.047 0.953 21 H 0.088 0.912 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.566 -2.444 -7.641 8.173 hybrid contribution -0.113 -0.704 0.908 1.154 sum -1.679 -3.148 -6.733 7.619 Atomic orbital electron populations 1.22458 0.89121 1.01334 1.00259 1.64791 1.07133 1.15198 1.37685 1.23097 0.95881 0.89961 0.99523 1.22382 0.95648 0.99016 0.96903 1.20335 0.89397 0.92575 0.98312 1.20767 1.50716 0.95866 0.87201 0.89564 1.24997 0.93898 0.98059 0.95379 1.69848 1.45833 1.35785 1.00053 0.87874 0.78882 0.87143 0.79803 1.19804 1.20775 1.16412 1.22767 0.85031 0.92706 0.79539 1.92882 1.96740 1.87016 1.43388 1.92885 1.50991 1.81347 1.93102 1.23551 0.97042 0.97776 0.90201 0.92074 0.92070 0.95279 0.91246 0.93441 0.92007 0.90727 0.92060 0.90442 0.92426 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.41 60.06 0.57 0.84 15 2 N -0.52 -10.11 5.55 -238.71 -1.33 -11.44 15 3 C 0.04 0.80 6.56 -1.90 -0.01 0.78 15 4 C -0.10 -2.08 5.90 -24.87 -0.15 -2.23 15 5 C 0.00 -0.09 0.32 -154.31 -0.05 -0.14 15 6 C -0.51 -13.51 8.22 -34.44 -0.28 -13.80 15 7 H 0.09 2.49 7.76 -52.49 -0.41 2.08 15 8 C 0.08 2.20 5.23 -17.82 -0.09 2.11 15 9 N -0.88 -25.45 13.96 55.43 0.77 -24.68 15 10 Si 0.83 19.54 23.19 -169.99 -3.94 15.60 15 11 H -0.27 -6.31 6.92 56.52 0.39 -5.92 15 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 13 H -0.24 -5.16 4.25 56.52 0.24 -4.92 15 14 C 0.25 5.82 3.61 37.16 0.13 5.95 15 15 F -0.22 -4.79 16.11 2.25 0.04 -4.75 15 16 F -0.20 -4.80 16.88 2.25 0.04 -4.76 15 17 C 0.04 0.91 3.89 -2.75 -0.01 0.90 15 18 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 19 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 20 H 0.03 0.48 7.99 -51.93 -0.42 0.06 15 21 H 0.07 1.11 8.14 -51.93 -0.42 0.69 15 22 H 0.05 0.89 8.00 -51.93 -0.42 0.48 15 23 H 0.06 1.23 7.31 -51.93 -0.38 0.85 15 24 H 0.07 1.52 7.65 -51.92 -0.40 1.13 15 25 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 26 H 0.08 1.80 2.97 -51.93 -0.15 1.65 15 27 H 0.06 1.31 6.35 -51.93 -0.33 0.98 15 28 H 0.07 1.43 5.89 -51.93 -0.31 1.12 15 LS Contribution 223.76 15.07 3.37 3.37 Total: -1.00 -28.00 223.76 -4.32 -32.33 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -3.38 Total: -0.10 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 0.10 Total: -5.58 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: -0.55 Total: -36.12 kcal Atomic # 9 Polarization: -9.58 SS G_CDS: 0.07 Total: -9.51 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -3.94 Total: 15.60 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -28.00 -4.32 -32.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261321042.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.135 kcal (2) G-P(sol) polarization free energy of solvation -28.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds